Introduction

Poor reproducibility, the inability of reproducing, by using the original data, the original data analysis exactly, and replicability, the inability of reproducing, by new experiments, the original data approximately, have become major concerns in experimental biomedical science. So far reproducibility and replicability issues have been mostly addressed in different studies, making it difficult to prise apart their relative contributions to the quality of an experimental system in the wild {Iqbal:2016es}.

Determining the reproducibility of a study is relatively straightforward – one needs to ascertain that the original data analysis methods are described in sufficient detail and that the original data is obtainable in an analysable form.

Reproducibility of a study merely suggest that the data analysis of the original study was done, if not correctly, at least successfully by following the published plan. Reproducibility is a minimum requirement for soundness of a study, but does not guarantee it {Bollen:2015wf}.
Neither does a successful replication generate new evidence in favour or a scientific hypothesis {Goodman:2016bo}.

In contrast, a replication study generates new data by the original experimental procedures (although not necessarily the original data analytic methods). Replicability presupposes that we have access to a sufficiently detailed description of the experimental aspects of the study. Unlike a successful reproduction of a study, a successful replication introduces new evidence to science and thus essentially constitutes a form of meta-analysis, which has the potential to change the conclusions of the original study {Goodman:2016bo}. A successful replication is no guarantee for stability of conclusions – indeed, studies that give negative results individually can point to scientifically meaningful effects, when analysed together {Goodman:2016bo}. Moreover, even when presented with identical data there is room for reasonable disagreements about scientific conclusions among people with different interpretations of the scientific context of the problem {Maivali:2015wr}. There are two major hurdles in the replication business: the high cost of actually repeating experiments and a lack of consensus on how to measure replicability, which has led to the presentation of several potentially contradictory measures of replicability, even in the same paper (REF). This makes it desirable to first estimate in silico, which studies are worth replicating in the lab, and how to best replicate them.

To do this efficiently, we will concentrate on a single experimental system: differential expression profiling by RNA sequencing. RNA-seq has several advantages as a model system for studying experimental quality. It is currently a widely used and fast-growing system, suggesting that many new researchers adopt it every year 1. With a typical experiment costing in the range of … it consumes a great deal of public funding.

Nuleotide sequences and associated metadata is stored in three major public repositories – NCBI Sequence Read Archive (SRA), the European Bioinformatics Institute (EBI), and the DNA Database of Japan (DDBJ) that share data under International Nucleotide Sequence Database Collaboration (INSDC).

In contrast to INSDC, NCBI GEO functional genomics database also requires submission of a processed or summary data from which the conclusions in associated manuscripts are based. GEO arranges submission of the uploaded raw data files to SRA. Importantly, processed summary data allows the direct evaluation and reproduction of analysis.

RNA-seq is usually done in a massively parallel way, testing for differential expression between experiment and control conditions of thousands of RNA pairs. This allows to check the quality of each RNA-seq experiment by examining the distribution of the p values that were calculated by the original authors and were used by them to make inferences about differential expression of individual RNAs in their study (REF). Equally importantly, when these p values indicate a technically successful experiment, they can be further used to calculate the false discovery rate (FDR) and the stable retrospective power (SRP), which together enable to analyse the replication potential of the study (REF). This leads to a quality control procedure that works by sequential elimination and first discards the studies that do not describe their methods or deposit data, then the ones whose data (the p values) indicate serious problems with experimental design and/or data analysis, and finally the studies, whose low power suggests scientific irrelevance. Thus we aim to estimate the general quality of the RNA-seq field, determine the quality of individual studies, estimate the efficiency of potential replication studies, propose improvements in the design of these replication studies, and determine, which step of the RNA-seq process would have the greatest gains in terms of the overall health of the field, should improvements be targeted to it.

We believe that the health of a field of science can be best and cheapest gauged by a sequential elimination procedure: (1) estimating the fraction of reproducible publications in it, (2) actually reproducing its analyses, where possible, and checking for signs of failed experimental design and data analyses, (3) from the publications that by reproducibility criteria are worthy of replication attempts, estimating the statistical power of the experimental systems to provide reproducible results in replication studies, as well as the number of true effects left undiscovered in the original study that could be found in the replication study, (4) estimating the magnitude of changes to the experimental protocol (especially to sample size) that would allow high-powered replication studies.

Here we offer an integrated picture of the reproducibility and expected replicability of a modern and popular method of determining differential expression levels of RNAs, namely expression profiling by RNA sequencing.

We set out to assess following checklist for RNA-seq experiments submitted to Entrez GEO database.

  1. Reproducibility: is data usable for reanalysis? (deposition to a public database)
  2. Compliance with GEO database submission requirements?
  3. How many of the GEO submissions provide p value tables?
  4. P histograms – how many experiments are poorly designed/analysed?
  5. Replicability measures: SRP, nr of undiscovered effects, expected replication rate, required sample size for high power?

Materials and methods

Data query and import

Data was queried from NCBI GEO database by using eSearch E-Util with search string “expression profiling by high throughput sequencing[DataSet Type]” using entrezquery R package. GEO UIDs were extracted from query results with xml2 package v1.2.0 (Wickham, Hester, and Ooms 2018). UIDs were used to retrieve GEO document summaries using eSummary E-Util. Metadata was extracted from document summaries using xmlSApply function from XML package v3.98-1.17 (Temple Lang and CRAN Team 2019) and FTPLinks were used to identify supplemental files. We excluded from downloading supplemental files which contained pattern: ‘filelist’ ,‘annotation’ ,‘readme’ ,‘error’ in the file name and we also excluded files with following pattern ‘raw.tar’ ,‘csfasta’ ,‘bam’ ,‘sam’ ,‘bed’ ,‘[:punct:]hic’ ,‘hdf5’ ,‘bismark’ ,‘map’ ,‘barcode’ ,‘peaks’ ,‘tar’ ,‘gtf’ ,‘(big)?bed(.txt|12|graph|pk)?’ ,‘bw’ ,‘wig’ ,‘hic’ ,‘gct(x)?’ ,‘tdf’ ,‘gff(3)?’ ,‘pdf’ ,‘png’ ,‘zip’ ,‘sif’ ,‘narrowpeak’ ,‘fa(sta|stq)?’ ,‘r\(' ,'rda(ta)?\)’ in the file extension. Flat tables were imported into R using fread function from package data.table v1.12.0 (Dowle and Srinivasan 2019). MS Excel xls(x) files were imported using read_excel function from package readxl v1.2.0 (Wickham and Bryan 2018). Compressed xls(x) files were uncompressed before import using gzip. HT-seq experiment metadata was extracted from series matrix files. Supplementary files and series matrix files were downloaded using entrezquery package.

Data analysis

Exact binomial test was used to test differences in proportions. Proportion of true nulls was calculated using propTrueNull function from limma package v3.38.3 (???).

Code availability

Source code is available in github repo org/reponame.

Results

HT-sequencing expression data in GEO database

To assess the quality of high-throughput sequencing datasets we queried the NCBI GEO database for “expression profiling by high throughput sequencing”. Query retrieved 16427 datasets. GEO database shows exponentially growing number of HT-seq data set submissions between 2006 and 2017 (Fig. 1). First HT-seq data set was submitted to GEO database at 2006-09-08. We limited our query for datasets submitted up to the 2017-12-31 to reduce the number of recent incomplete submissions.

Approximately 68% of GEO data sets (11199) contain data from mouse or human origin (Fig. 1, left facet). The 87% (95%CI, 86.3% to 87.6%) of human and mouse data sets are linked to their primary publication. The proportion of datasets with publications is lower when other taxa are used as model organisms 78% (95%CI, 76.7% to 79.0%)(Fig. 1, right facet). As expected, the gap between published GEO series and published articles is bigger for more recent submissions.

For the human and mouse subset, we were able to identify supplementary files for 97% (13120) of GEO series.
The data sets lacking public supplementary files nevertheless show 83% publication rate (95%CI, 79.6% to 86.6%) which is similar to data sets with supplementary files.

Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 11199. Right facet, submissions of other taxa, N = 5228. Dashed line, GEO series with publications.

Figure 1: Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 11199. Right facet, submissions of other taxa, N = 5228. Dashed line, GEO series with publications.

Compliance with GEO database submission requirements and data usability for reanalysis

We sought to determine the compliance with the formal requirements for GEO data submission (https://www.ncbi.nlm.nih.gov/geo/info/seq.html). This pertains to the reproducibitly of data analysis. GEO archive has three required components: metadata, processed data, and raw data. Minimally these processed files are required to contain raw or normalized sequence read counts, or peak files of ChIP-Seq data. While, in the presence of raw data, supplementary data is not strictly neccessary for reproducibility, reproducing analysis from the raw data requires the reproduction of the full analysis, starting from re-aligning sequences to the genome, which can be practically unfeasible.

Supplementary HT-seq files uplodaded to NCBI GEO contain most commonly raw or processed sequence data files as a ‘RAW.tar’ archive and associated automatically generated ‘filelist.txt’ file (Fig. 2). ‘RAW.tar’ archive contains one file per sample and samples can be directly mapped to metadata by using sample name.

Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.

Figure 2: Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.

RAW.tar files are included in 59% (7727) of GEO series, whereas only RAW.tar and filelist.txt is present in 47% (6203) GEO series (Fig. 2 and 3).

Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.

Figure 3: Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.

Other common files contain annotations ‘readme.txt’ and processed data: commonly sequence read counts, gene expression analysis results or ChIP-Seq peak counts.

Sequence read counts can be either as raw read counts or normalised read counts. Gene expression analysis of HT-seq data is commonly performed by fitting models to discrete sequence read count data. Normalised sequence read counts are used for plotting and visual evaluation of the analysis results, but cannot be used to directly reproduce gene expression analysis.

However, tables containing top-ranked genes/features (toptables) from gene expression analysis with complete set of raw P values allow direct evaluation of the data and analysis quality underlying tested hypothesis.

Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.

Figure 4: Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.

GEO datasets contain most commonly one to two supplementary files per Accession and up to 269 files per Accession (Fig. 4). To reduce number of files to be downloaded from GEO database, based on file extensions and filenames, we excluded from the dataset files that most plausibly don’t contain final processed data in a tabular format, such as binary files, annotations, raw data, graphics, and other non tabular files. This filter reduced the number of files by 62% (Fig. 4) and GEO series by 53%. Resulting dataset consisted of 12776 files from 6178 GEO series to be downloaded.

Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.

Figure 5: Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.

Processed data

Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 27 and median 8. Most frequent sample size was 6. Mean number of features was 62096 and median 21120.5. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.

Figure 6: Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 27 and median 8. Most frequent sample size was 6. Mean number of features was 62096 and median 21120.5. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.

Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.

Figure 7: Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.

Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.

Figure 8: Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.

Citation of articles featuring HT-seq data. (A) Distribution of the number of citations in P value sets displaying anti-conservative histogram compared to other histogram types. (B) Relationship between the proportion of true nulls and number of citations. Blue line, linear model fit. Citation data is from Scopus database.

Figure 9: Citation of articles featuring HT-seq data. (A) Distribution of the number of citations in P value sets displaying anti-conservative histogram compared to other histogram types. (B) Relationship between the proportion of true nulls and number of citations. Blue line, linear model fit. Citation data is from Scopus database.

Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.

Figure 10: Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.

Sample size in HT-seq GEO series. Experimental groups were inferred from GEO series matrix files and mean samples size was calculated from experimental group sizes.

Figure 11: Sample size in HT-seq GEO series. Experimental groups were inferred from GEO series matrix files and mean samples size was calculated from experimental group sizes.

Proportion of true nulls versus sample size. Proportion of true nulls was calculated for anti-conservative P value sets.

Figure 12: Proportion of true nulls versus sample size. Proportion of true nulls was calculated for anti-conservative P value sets.

Table 1: Summary of histogram types in supplementary files of GEO HT-seq submissions.
Type n %
anti-conservative 468 30.0%
bimodal 300 19.3%
conservative 670 43.0%
other 56 3.6%
spiky 57 3.7%
uniform 7 0.4%
Table 2: Histogram types after filtering out non-informative features.
Type n %
anti-conservative 173 79.4%
other 37 17.0%
spiky 6 2.8%
uniform 2 0.9%
Table 3: Proportion of histograms that could be fixed by filtering out non-informative features.
Type conversion n %
improvement 56 25.7%
no improvement 31 14.2%
same bad 14 6.4%
same good 117 53.7%
Table 4: P value histograms and proportion of true nulls. Histograms are colored according to clustering oftheir empirical cumulative distribution function outputs. Supplementary file names for tables from xls(x) files might be appended with sheet name. This table contains 1558 unique P value histograms from 729 GEO Accessions. pi0 was calculated using limma::propTrueNull() function.
Accession Supplementary file name (with p-value set id) Histogram Type pi0 Histogram after filter Type after filter pi0 after filter Organism Taxid Multiple_taxons
GSE94840 GSE94840_Alox5_vs_Control.all.gene.result.txt.gz other NA other NA Mus musculus 10090 FALSE
GSE83664 GSE83664_NS_M_vs_Input.isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Sb_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE89364 GSE89364_mav_RNASeq_exp_deqiangs.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72712 GSE72712_ESCd_gt70_over_ESCd_40-70.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_40-70 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77303 GSE77303_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE73678 GSE73678_Differential_gene_expression.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE66652 GSE66652_AS13-C_differential_expression.txt.gz bimodal NA NA NA NA Rhizoctonia solani AG-3 Rhs1AP 1086054 FALSE
GSE63748 GSE63748_exp_7d4h_diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE50156 GSE50156_nmt1-hsf1_MMThi-_AND_WT_MMThi-.txt.gz conservative NA NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE94587 GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz bimodal NA anti-conservative 0.83 Homo sapiens 9606 FALSE
GSE83664 GSE83664_NS_vs_Input.isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_24.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE77471 GSE77471_RNASEQ_differential_expression.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72712 GSE72712_ESCd_gt70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_lt40 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE70382 GSE70382_DESeq_allresp_vs_nonresp.xlsx-sheet-Blad1 conservative NA uniform NA Anguilla anguilla 7936 FALSE
GSE61566 GSE61566_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE61733 GSE61733_gene_exp.diff.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE50156 GSE50156_ssa2D_AND_WT_24oC.txt.gz conservative NA NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE99397 GSE99397_CreNeg-MHCPos_vs_Control.CuffDiff.gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE94587 GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz bimodal NA anti-conservative 0.60 Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE72712 GSE72712_ESCd_gt70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-u.cuffdiff conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE64687 GSE64687_FPKM_and_differential_expression_for_mRNA.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE66652 GSE66652_S4-C_differential_expression.txt.gz bimodal NA NA NA NA Rhizoctonia solani AG-3 Rhs1AP 1086054 FALSE
GSE61690 GSE61690_DormantvsNondormant_meristems.txt.gz bimodal NA NA NA NA Solanum tuberosum 4113 FALSE
GSE99397 GSE99397_CreNeg-MHCPos_vs_CrePos-MHCNeg.CuffDiff.gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE94587 GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz bimodal NA anti-conservative 0.80 Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_HEAT_gene_exp.diff.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE81522 GSE81522_N2_vs_ok600_gene_differential_expression_testing.txt.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE84450 GSE84450_WT_UTvsKO_DTT_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72712 GSE72712_ESCd_lt40_over_ESCu.cuffdiff.xlsx-sheet-EST-d_lt40_over_EST-u.cuffdiff conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE29992 GSE29992_Het1_KO2_expr.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE99397 GSE99397_CrePos-MHCNeg_vs_Control.CuffDiff.gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE87626 GSE87626_nc_vs_19_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_Global.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE75614 GSE75614_processed_data_mrna-seq_differential_expression.xlsx conservative NA NA NA NA Tachysurus vachellii 175792 FALSE
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_SALT_HEAT_gene_exp.diff.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE84450 GSE84450_WT_UTvsKO_UT_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75787 GSE75787_gene_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE66445 GSE66445_M._a.-pES1-MATmcr3_methane_vs._M.a.-pES1-MATmcr3_methanol_GEO_Processed_data.xlsx-sheet-Sheet1 conservative NA NA NA NA Methanosarcina acetivorans 2214 FALSE
GSE63707 GSE63707_DEXSeqResults_IFMWT_03d_vs_jump_0d.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE61566 GSE61566_promoters.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85416 GSE85416_isoform_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Sv_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE73321 GSE73321_FW_VS_BW_expression_diff.txt.gz other NA NA NA NA Plecoglossus altivelis 61084 FALSE
GSE74886 GSE74886_processedFPKMS.xlsx bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_SALT_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE84450 GSE84450_WT_UTvsWT_DTT_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE68229 GSE68229_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE64840 GSE64840_2N_Ts65Dn_MEFs.gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63707 GSE63707_DEXSeqResults_IFMWT_03d_vs_leg_0d.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE61566 GSE61566_splicing.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-0 bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-1 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-2 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE43431 GSE43431_mRNA_STHdh_CUFF_gene_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Sv_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE87315 GSE87315_CuffDiff_RNA-seq.csv.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE84249 GSE84249_cuffdiff_gene_differential_expression_testing.tab.gz conservative NA NA NA NA Rattus norvegicus 10116 FALSE
GSE84450 GSE84450_WT_UTvsWT_DTT_splicing.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE68229 GSE68229_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE70584 GSE70584_Liberman2015_Wholeroot_CUFFLINKS_gene_exp.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE67954 GSE67954_CSR1_RNAi_DESeq_output.txt.gz bimodal NA other NA Caenorhabditis elegans 6239 FALSE
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0 conservative NA anti-conservative 0.94 Homo sapiens 9606 FALSE
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-1 conservative NA anti-conservative 0.99 Homo sapiens 9606 FALSE
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-2 conservative NA other NA Homo sapiens 9606 FALSE
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-3 conservative NA other NA Homo sapiens 9606 FALSE
GSE61566 GSE61566_tss_group_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE97395 GSE97395_Treat_vs_control_diff.txt.gz spiky NA anti-conservative 0.60 Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Sv_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE84450 GSE84450_WT_UTvsX_DTT_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE73289 GSE73289_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE67954 GSE67954_P_granule_RNAi_DESeq_output.txt.gz conservative NA other NA Caenorhabditis elegans 6239 FALSE
GSE48230 GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE42443 GSE42443_Brg1cKO_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE85565 GSE85565_Result_Table.csv.gz spiky NA anti-conservative 0.55 Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_24.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE84450 GSE84450_WT_UTvsX_UT_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE81858 GSE81858_AA_ABBB_gene_exp.diff.gz conservative NA NA NA NA Equus caballus 9796 FALSE
GSE70584 GSE70584_Liberman2015_sorted_CUFFLINKS_gene_exp.txt.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE48230 GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE76304 GSE76304_gene_exp.diff.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE70668 GSE70668_DD_gene_exp.diff.csv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE56013 GSE56013_A.Wildtype_wholefly_DCVrel.Mock.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE64025 GSE64025_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE68470 GSE68470_xue_etal_edgeR.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE58053 GSE58053_1mm-over-0mm.txt.gz bimodal NA NA NA NA Nitrobacter winogradskyi 913 FALSE
GSE56013 GSE56013_B.G9amutant_wholefly_DCVrel.Mock.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE49716 GSE49716_pei1vspei3_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE49700 GSE49700_FB_FLM.RNA.txt.gz other NA NA NA NA Tuber melanosporum 39416 FALSE
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_isoform_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE81437 GSE81437_polyA_differential_gene_expression.txt.gz conservative NA NA NA NA Rattus norvegicus 10116 FALSE
GSE86442 GSE86442_gene_differential_expression.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_Global.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE81493 GSE81493_Differential_gene_expression_analysis.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE56013 GSE56013_E.Wildtype_fatbody_DCVrel.Mock.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE36710 GSE36710_RBFOX1_Splicing_Events.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE95679 GSE95679_Mishima_2017_Dcp2.txt.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE56013 GSE56013_F.G9amutant_fatbody_DCVrel.Mock.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE35616 GSE35616_DESeq.txt.gz spiky NA anti-conservative 0.87 Mus musculus 10090 FALSE
GSE36710 GSE36710_RBFOX1_Transcriptional_Events.txt.gz bimodal NA anti-conservative 1.00 Homo sapiens 9606 FALSE
GSE87862 GSE87862_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE94120 GSE94120_K562pos_rel_abundance_1x1.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE83717 GSE83717_FPKMs_pvalue_matrices.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE85442 GSE85442_cuffdiff.gene_exp_diff.allg.txt.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE74220 GSE74220_Expression_of_Protein_Coding_Genes_in_Control_and_IL1b_treated_human_chondrocytes.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65697 GSE65697_RNA-seq.csv.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE56013 GSE56013_I.G9amutant_rel.to_Wildtype_DCV_WholeFly.txt.gz spiky NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE63300 GSE63300_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE58082 GSE58082_gene_exp.diff.txt.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE49700 GSE49700_aza.repeats.txt.gz conservative NA NA NA NA Tuber melanosporum 39416 FALSE
GSE49313 GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE49313 GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE48230 GSE48230_PC3-EMT14_v_PC3-Epi_gene_exp.diff.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE94120 GSE94120_SKNSHpos_rel_abundance_1x1.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE64641 GSE64641_leaf_gene_exp.diff.txt.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE85442 GSE85442_cuffdiff.isoform_exp.diff.txt.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE77902 GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz conservative NA anti-conservative 0.78 Homo sapiens 9606 FALSE
GSE56013 GSE56013_J.G9amutant_rel.to_Wildtype_DCV_Fatbody.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE59850 GSE59850_redgrn_early_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE49700 GSE49700_aza.txt.gz other NA NA NA NA Tuber melanosporum 39416 FALSE
GSE49313 GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE49313 GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE48230 GSE48230_PC3-EMT14_v_PC3-Epi_isoform_exp.diff.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE47399 GSE47399_diff_exp_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE98869 GSE98869_diffexp.tsv.gz spiky NA other NA Caenorhabditis elegans 6239 FALSE
GSE75640 GSE75640_HR1_vs_control_1_gene_exp.diff.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE94843 GSE94843_cuffdiff_mock_vs_lox.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE94120 GSE94120_U2OS-PcTF_rel_abundance_1x3.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE64641 GSE64641_seedling_gene_exp.diff.txt.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE85442 GSE85442_cuffdiff.tss_group_exp.diff.txt.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE77901 GSE77901_SLNCR1_vs_vector.deseq.txt.gz conservative NA anti-conservative 0.65 Homo sapiens 9606 FALSE
GSE70806 GSE70806_rf6a_matrix.txt.gz conservative NA NA NA NA Macaca mulatta 9544 FALSE
GSE68360 GSE68360_cds.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE50554 GSE50554_Routine_gene.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75640 GSE75640_HR2_vs_control_2_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE81707 GSE81707_N2_HC125_RNA-seq_PairedEnd_gene_exp_diff.xlsx conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE94843 GSE94843_cuffdiff_mock_vs_mnv.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE94120 GSE94120_U2OSpos_rel_abundance_1x1.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85863 GSE85863_Galaxy238-_Cuffdiff_on_data_40__data_35_and_others_gene_differential_expression_testing.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE77901 GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz conservative NA anti-conservative 0.92 Homo sapiens 9606 FALSE
GSE80128 GSE80128_P035_DESeq_KO-WT_pathway.txt.gz bimodal NA anti-conservative 0.80 Mus musculus 10090 FALSE
GSE76125 GSE76125_SenesUntreated_vs_SenesTreated_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE68360 GSE68360_cds_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE47083 GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-0 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE47083 GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-1 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE61845 GSE61845_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE59850 GSE59850_redgrn_late_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE52502 GSE52502_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE50554 GSE50554_Routine_isoform.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE44333 GSE44333_d33_mock_vs_mhv_res_noNA.txt.gz bimodal NA anti-conservative 0.96 Mus musculus 10090 FALSE
GSE93748 GSE93748_shTAZ_in_DU145_proceeded_data.xlsx spiky NA anti-conservative 0.91 Homo sapiens 9606 FALSE
GSE81707 GSE81707_N2_HC125_RNA-seq_SingleEnd_gene_exp_diff.xlsx conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE94821 GSE94821_cuffdiff_mock_vs_12hpi.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77422 GSE77422_H358_Control-GNF5.xlsx-sheet-Sheet1 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE67001 GSE67001_gene_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE77901 GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz bimodal NA anti-conservative 0.57 Homo sapiens 9606 FALSE
GSE70314 GSE70314_Gal474_cuffdiff_sictrl.1_siAtad2.1_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE68360 GSE68360_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE61796 GSE61796_NG_Induced_transcript_changes.txt.gz conservative NA NA NA NA Solanum tuberosum 4113 FALSE
GSE50554 GSE50554_Stringent_gene.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE49389 GSE49389_RNAseq_gene_exp.txt.gz conservative NA NA NA NA Rattus norvegicus 10116 FALSE
GSE93339 GSE93339_e125_Yap-mt_lung_all_genes.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_EPZ_x_K27M_EPZ other NA NA NA NA Mus musculus 10090 FALSE
GSE94821 GSE94821_cuffdiff_mock_vs_16hpi.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77422 GSE77422_PC9M_Control-GNF5.xlsx conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77693 GSE77693_deseq.comparison.csv.gz spiky NA anti-conservative 1.00 Mus musculus 10090 FALSE
GSE68360 GSE68360_isoform_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE59850 GSE59850_redrho_late_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE50554 GSE50554_Stringent_isoform.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE94821 GSE94821_cuffdiff_mock_vs_20hpi.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77422 GSE77422_PC9M_SCR-AA.xlsx conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE75332 GSE75332_Ad_AGGF1vsAd_NC.Differential_analysis_results.txt.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE74893 GSE74893_ctrl_and_Tsc1ckO_gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70314 GSE70314_Gal476_cuffdiff_sictrl.1_siAtad2.1_transcript_differential_expression_testing.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE74196 GSE74196_SnapC_gene_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE68360 GSE68360_promoters.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54240 GSE54240_phoP_RNA-seq.tsv.gz bimodal NA NA NA NA Mycobacterium tuberculosis H37Rv 83332 FALSE
GSE94821 GSE94821_cuffdiff_mock_vs_4hpi.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77422 GSE77422_PC9_Control-GNF5.xlsx conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE81593 GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx bimodal NA anti-conservative 0.36 Homo sapiens 9606 FALSE
GSE70833 GSE70833_Rennoll_et_al_processed_data.xlsx-sheet-Cuffdiff conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE68360 GSE68360_splicing.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63133 GSE63133_D.rerio_SVCV_infected__24K__vs_control_0K.txt.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE56052 GSE56052_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE59850 GSE59850_redvio_late_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE57682 GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE57682 GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE89572 GSE89572_24h_DEGs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE88970 GSE88970_Whsc1_proB_DE.xlsx-sheet-4P_05_WT_vs_KO_results spiky NA anti-conservative 0.88 Mus musculus 10090 FALSE
GSE94821 GSE94821_cuffdiff_mock_vs_8hpi.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77422 GSE77422_PC9_SCR-AA.xlsx conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE81593 GSE81593_2.Mcf10A_Vec_and_Hras.xlsx bimodal NA anti-conservative 0.63 Homo sapiens 9606 FALSE
GSE83827 GSE83827_WT_vs_tf5.xlsx-sheet-gene_exp_diff bimodal NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE70314 GSE70314_Gal485_cuffdiff_sictrl.2_siAtad2.2_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE60630 GSE60630_PDC3_vs_DMSO_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE56073 GSE56073_PARP-1-KD_tss_group_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE71295 GSE71295_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63836 GSE63836_Dx_versus_C15Dx.DESeq.txt.gz bimodal NA anti-conservative 0.83 Mus musculus 10090 FALSE
GSE62668 GSE62668_Embryo.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE63133 GSE63133_D.rerio_SVCV_infected__24S__vs_control_0S.txt.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-0 spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE43660 GSE43660_control_vs_IL4_1hr.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE36695 GSE36695_H1H9KSR_SFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H1H9KSR_SFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE89572 GSE89572_2h_DEGs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE71133 GSE71133_Supplementary_Table_2.xlsx-sheet-FC > 0 uniform NA other NA Mus musculus 10090 FALSE
GSE71133 GSE71133_Supplementary_Table_2.xlsx-sheet-FC < 0 uniform NA other NA Mus musculus 10090 FALSE
GSE60630 GSE60630_PDC3_vs_DMSO_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE56073 GSE56073_PARylation_tss_group_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE59621 GSE59621_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE62668 GSE62668_Sperm.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE63133 GSE63133_D.rerio_SVCV_infected__6K__vs_control_0K.txt.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE60171 GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE60171 GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE59850 GSE59850_rhogrn_early_cuffdiff_out.diff.txt.gz conservative NA NA NA NA Gallus gallus 9031 FALSE
GSE50739 GSE50739_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE43660 GSE43660_control_vs_IL4_4hr.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE36695 GSE36695_H1H9KSR_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H1H9KSR_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE89572 GSE89572_7d_DEGs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE98526 GSE98526_A2_vs_UA159T5.txt.gz other NA NA NA NA Streptococcus mutans UA159 210007 FALSE
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_PPC_genes_diff.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE70314 GSE70314_Gal487_cuffdiff_sictrl.2_siAtad2.2_transcript_differential_expression_testing.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE60630 GSE60630_PDC3_vs_DMSO_splicing.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE67029 GSE67029_cuffdiff_mh_h8.txt.gz bimodal NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE63133 GSE63133_D.rerio_SVCV_infected__6S__vs_control_0S.txt.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE53470 GSE53470_gene_exp_P251_PCJ_3rep_combined.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE60171 GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE60171 GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE43660 GSE43660_control_vs_il33_1hr.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE36695 GSE36695_H1KSR_H1SFM.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H1KSR_H1SFM.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_genes_diff.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE71159 GSE71159_E3KO_vs_EfCtrl_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE73893 GSE73893_Results_DEXseq.txt.gz uniform NA NA NA NA Homo sapiens 9606 FALSE
GSE54473 GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54473 GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE53470 GSE53470_gene_exp_P251_PJD_3rep_combined.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE54286 GSE54286_Lys_sup_pelle_rs_mvhip_Exp.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE43660 GSE43660_control_vs_il33_4hr.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE36695 GSE36695_H1SFM_H9SFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H1SFM_H9SFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_PPC_genes_diff.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE71159 GSE71159_ECtrl_vs_E3KO_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE58115 GSE58115_4858DM98-3_VS_4858C6_differential_all.txt.gz bimodal NA NA NA NA Streptomyces hygroscopicus subsp. jinggangensis 5008 1133850 FALSE
GSE36695 GSE36695_H1SFM_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H1SFM_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE35178 GSE35178_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE79724 GSE79724_DEseq_LG3-LG6-LG9_LG2-LG5-LG8_DEG_list.csv.gz conservative NA other NA Homo sapiens 9606 FALSE
GSE89504 GSE89504_TSS_groups_exp.tabular.txt.gz bimodal NA NA NA NA Acinetobacter baumannii ATCC 17978 400667 FALSE
GSE85328 GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz bimodal NA anti-conservative 0.76 Mus musculus 10090 FALSE
GSE81575 GSE81575_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE71159 GSE71159_ECtrl_vs_EfCtrl_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72172 GSE72172_S2_vs_SIN3_187.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE36695 GSE36695_H9KSR_H9SFM.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H9KSR_H9SFM.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE35178 GSE35178_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE34329 GSE34329_processed_RNAseq_N_way_cuffdiff_combined_replicates_NIvIvPAvPS1145.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE79723 GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz conservative NA anti-conservative 0.89 Mus musculus 10090 FALSE
GSE87307 GSE87307_mRNA_processed_results.xlsx bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-E VS LYP9-E conservative NA NA NA NA Oryza sativa 4530 FALSE
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S4 bimodal NA NA NA NA Oryza sativa 4530 FALSE
GSE36695 GSE36695_H9KSR_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H9KSR_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-1 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-2 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-3 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-4 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-5 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE81865 GSE81865_RNAseq_uninjured-14dpi.txt.gz bimodal NA anti-conservative 0.46 Danio rerio 7955 FALSE
GSE76453 GSE76453_cuffdiff_E2.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE53599 GSE53599_D5-1322_vs_RLuc-713_24hrs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE36695 GSE36695_H9SFM_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE36695 GSE36695_H9SFM_hfSFM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE97129 GSE97129_CG9879_vs_WT_CuffDiff_Output_BDGP5.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE83265 GSE83265_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE89504 GSE89504_gene_exp.tabular.txt.gz bimodal NA NA NA NA Acinetobacter baumannii ATCC 17978 400667 FALSE
GSE85950 GSE85950_EHEC_plusminus_Symbioflor.xlsx spiky NA NA NA NA Escherichia coli O157:H7 str. EDL933 155864 FALSE
GSE76453 GSE76453_cuffdiff_siCtl.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE75247 GSE75247_processed_data.txt.gz-set-0 spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE75247 GSE75247_processed_data.txt.gz-set-1 spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE69125 GSE69125_10408_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE60441 GSE60441_gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE53599 GSE53599_D5-1322_vs_RLuc-713_48hrs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE97129 GSE97129_Can_vs_WT_CuffDiff_Output_BDGP5.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE83819 GSE83819_gene_exp.diff.gz bimodal NA NA NA NA Aspergillus niger 5061 FALSE
GSE85554 GSE85554_deg_and_counts_table_new_read_counts.txt.gz spiky NA other NA Danio rerio 7955 FALSE
GSE76453 GSE76453_cuffdiff_siZNF143.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77398 GSE77398_ribo_cuffdiff_genes.xls.gz bimodal NA NA NA NA Plasmodium falciparum 5833 FALSE
GSE66619 GSE66619_DRG_Con_vs_Ips_mrna_gene_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE52284 GSE52284_gene_exp.diff.gz bimodal NA NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE53599 GSE53599_D5-2086_vs_RLuc-713_24hrs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE87824 GSE87824_processed_data.xlsx bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE97129 GSE97129_Comr_vs_WT_CuffDiff_Output_BDGP5.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE88700 GSE88700_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE87168 GSE87168_Watson_et_al_TOXSCI-16-0457_Diff_Gen_Exp.csv.gz conservative NA NA NA NA Oryzias latipes 8090 FALSE
GSE76453 GSE76453_cuffdiff_veh.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77862 GSE77862_nhay_-_Alb-Cre.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE65406 GSE65406_control_vs_gld1_DESeq.csv.gz conservative NA anti-conservative 1.00 Caenorhabditis elegans 6239 FALSE
GSE66619 GSE66619_Dorsal_Cord_Ipsi_vs_Con_mrna_gene_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE63889 GSE63889_Diff_0U_120U_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE53599 GSE53599_D5-2086_vs_RLuc-713_48hrs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE97129 GSE97129_Mip40_vs_WT_CuffDiff_Output_BDGP5.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE76257 GSE76257_O-VG_OGS2.csv.gz bimodal NA anti-conservative 0.21 Nasonia vitripennis 7425 FALSE
GSE83887 GSE83887_gene_exp_Hyl-2_vs_Hyl-2-G.diff.gz bimodal NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-0 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-1 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-2 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-3 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-4 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-5 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65406 GSE65406_gld1_vs_tumorfast_DESeq.csv.gz conservative NA other NA Caenorhabditis elegans 6239 FALSE
GSE63889 GSE63889_Diff_120U_120C_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE53653 GSE53653_st10.5_Foxh1_MO_gene_exp_diff.txt.gz conservative NA NA NA NA Xenopus tropicalis 8364 FALSE
GSE33265 GSE33265_gene_exp.diff.gz bimodal NA NA NA NA Oryza sativa 4530 FALSE
GSE83887 GSE83887_gene_exp_N2_vs_Hyl-2.diff.gz bimodal NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE83584 GSE83584_processed_data_Day0.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65406 GSE65406_gld1_vs_tumorfed_DESeq.csv.gz conservative NA other NA Caenorhabditis elegans 6239 FALSE
GSE63485 GSE63485_KS_J1Csh63_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE73077 GSE73077_fpkm_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE53653 GSE53653_st10.5_SB431542_gene_exp_diff.txt.gz conservative NA NA NA NA Xenopus tropicalis 8364 FALSE
GSE52551 GSE52551_delta_Rv3263_expr.txt.gz other NA NA NA NA Mycobacterium tuberculosis H37Rv 83332 FALSE
GSE46066 GSE46066_ICRFVsDMSO.txt.gz bimodal NA anti-conservative 0.79 Mus musculus 10090 FALSE
GSE33265 GSE33265_isoform_exp.diff.gz bimodal NA NA NA NA Oryza sativa 4530 FALSE
GSE83567 GSE83567_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE83887 GSE83887_gene_exp_N2_vs_N2G.diff.gz bimodal NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE77034 GSE77034_aza_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE83584 GSE83584_processed_data_Day3_5.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77793 GSE77793_gene_exp_diff_fc_hepatocytes_DMSO_GL_TamerSallam_122012.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE65406 GSE65406_tumorfed_vs_tumorfast_DESeq.csv.gz conservative NA other NA Caenorhabditis elegans 6239 FALSE
GSE63485 GSE63485_KS_J1Csh95_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE71369 GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE71369 GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE60756 GSE60756_Richards_092013_B6_vs_Cast_DESeq_Stats-NormSignal_Annotated.txt.gz uniform NA spiky NA Mus musculus 10090 FALSE
GSE85402 GSE85402_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE81251 GSE81251_Kdm6a_def_mouse_expression_value.xlsx spiky NA uniform NA Mus musculus 10090 FALSE
GSE86837 GSE86837_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE60177 GSE60177_PseudomonasDESeq.txt.gz conservative NA NA NA NA Pseudomonas aeruginosa PAO1 208964 FALSE
GSE77034 GSE77034_aza_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE80135 GSE80135_Lipo_siProx_sig_results.csv.gz spiky NA anti-conservative 0.73 Homo sapiens 9606 FALSE
GSE65406 GSE65406_youngadults_vs_gld1_DESeq.csv.gz conservative NA anti-conservative 1.00 Caenorhabditis elegans 6239 FALSE
GSE76627 GSE76627_CNBP-cuffdif.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE63485 GSE63485_shAML1_ETO_vs_shControl.all_gene_exp.tbl.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE66575 GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.gene_exp conservative NA NA NA NA Mus musculus 10090 FALSE
GSE66575 GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.isoform_e conservative NA NA NA NA Mus musculus 10090 FALSE
GSE65408 GSE65408_processed_data_file.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE40548 GSE40548_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE40548 GSE40548_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE38414 GSE38414_Maize_Silks_mRNA-Seq_gene_exp.diff.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE89168 GSE89168_36hpupalCNS_WT_dStimKD_CuffDiff.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE91060 GSE91060_E11_vs._E16.xls.gz bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE87240 GSE87240_gene_expnorliver.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE83405 GSE83405_geneExpDiffData_E14_cells_pnldc1_silencing.xlsx-sheet-Φύλλο1 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77034 GSE77034_combo_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85321 GSE85321_Supplemental_Table_2_YAD_RNA_seq_.xls.gz-sheet-YAD_Diff analysis bimodal NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE80135 GSE80135_siNeg_Lipo_results.csv.gz spiky NA anti-conservative 0.77 Homo sapiens 9606 FALSE
GSE74131 GSE74131_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_up conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_up conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_down bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_up conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_down bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE46486 GSE46486_young_old_deseq.txt.gz conservative NA spiky NA Homo sapiens 9606 FALSE
GSE91060 GSE91060_E11_vs._P1.xlsx bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE84145 GSE84145_E12.5RET_WT_NULL.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE87240 GSE87240_gene_expsk.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77034 GSE77034_combo_vs_aza.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85321 GSE85321_Supplemental_Table_3_YGD_RNA_seq_.xls.gz-sheet-YGD_Diff analysis bimodal NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE80135 GSE80135_siNeg_siProx_SC_results.csv.gz spiky NA anti-conservative 0.78 Homo sapiens 9606 FALSE
GSE67063 GSE67063_gene_exp.diff.gz bimodal NA NA NA NA Chlorocebus sabaeus 60711 FALSE
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_up conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_down conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_up conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_down conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_up conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_down conservative NA NA NA NA Mus musculus 10090 FALSE
GSE55394 GSE55394_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63758 GSE63758_gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE44831 GSE44831_BALBfabD1_BALBmockD1_24hr_post_expr.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE38413 GSE38413_Maize_Pericarp_14DAP_mRNA-Seq_gene_exp.diff.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE99347 GSE99347_H2AfZKO_WT.anno.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE89168 GSE89168_72hpupalCNS_WT_dStimKD+Recovery_CuffDiff.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 TRUE
GSE91060 GSE91060_E16_vs._P1.xlsx bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE87240 GSE87240_hep_gene_exphep.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77034 GSE77034_combo_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE68736 GSE68736_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE79822 GSE79822_Deseq_totalRNA.txt.gz bimodal NA anti-conservative 0.46 Caenorhabditis elegans 6239 FALSE
GSE64185 GSE64185_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE51893 GSE51893_wt_v_MZeomesa-sphere_gene_exp.txt.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Hypoxia conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Normoxia conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs Cntrl Hypoxia conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs ELT-2 Hypoxia conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntl Normoxia vs ELT-2 Normoxia conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-ELT-Normoxia vs ELT-2 Hypoxia conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE44831 GSE44831_BALBfabD1_BALBmockD1_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE92345 GSE92345_H9_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_H9_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_H9_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 TRUE
GSE77034 GSE77034_vc_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85321 GSE85321_Supplemental_Table_5_YAR_RNA_seq_.xls.gz-sheet-YAR diff. analysis bimodal NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE79822 GSE79822_cuffdiffs_mRNA.txt.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE63794 GSE63794_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE44831 GSE44831_BALBfab_BALBmj_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE38413 GSE38413_Maize_Pericarp_25DAP_mRNA-Seq_gene_exp.diff.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE96814 GSE96814_Deseq2_MS2RsaA.xlsx-sheet-Feuil1 other NA other NA Staphylococcus aureus 1280 FALSE
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 TRUE
GSE77032 GSE77032_aza_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85321 GSE85321_Supplemental_Table_6_JHD2_OE_YAD_.xls.gz-sheet-OE_EV_YAD_Diff analysis conservative NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE74381 GSE74381_gene_exp_control2vsZeb2cKO2diff.xlsx bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE80068 GSE80068_col_dms3_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE70728 GSE70728_KDM2B_RNAseq_DEG.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE69721 GSE69721_UP-_and_Down-regulated_genes.txt.gz bimodal NA NA NA NA Haemaphysalis flava 181088 FALSE
GSE64544 GSE64544_LV_processed.txt.gz conservative NA NA NA NA Canis lupus familiaris 9615 FALSE
GSE42805 GSE42805_acute_gene.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE44831 GSE44831_C57BL6fabD1_C57BL6mockD1_24hr_post_expr.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE96814 GSE96814_Deseq_TotRNA.xlsx-sheet-Feuil1 other NA other NA Staphylococcus aureus 1280 FALSE
GSE92345 GSE92345_HEK_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_HEK_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE92345 GSE92345_HEK_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 TRUE
GSE77032 GSE77032_aza_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85321 GSE85321_Supplemental_Table_7_JHD2_OE_YAR_.xls.gz-sheet-OE_EV_YAR_Diff analysis conservative NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE78834 GSE78834_gene_expression_profiles.txt.gz bimodal NA NA NA NA Desulfovibrio vulgaris 881 FALSE
GSE80068 GSE80068_col_h2h9_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE64544 GSE64544_MV_processed.txt.gz conservative NA NA NA NA Canis lupus familiaris 9615 FALSE
GSE62647 GSE62647_Setd8_differential_expression_analyses.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE47395 GSE47395_gene_exp.diff.anno.known.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE42805 GSE42805_cds.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE52385 GSE52385_siCtrl_VS_siSRA_assemblenewgenes.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE44831 GSE44831_C57BL6fabD1_C57BL6mockD1_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE87890 GSE87890_vgat1_csv.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE92874 GSE92874_RNA.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE95181 GSE95181_HNS_counts_and_DGE.txt.gz bimodal NA NA NA NA Mycobacterium tuberculosis H37Rv 83332 FALSE
GSE66155 GSE66155_regulation.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77032 GSE77032_combo_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE80707 GSE80707_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE78527 GSE78527_siSNRNP40_siControl_processed.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE80068 GSE80068_col_nrpe1_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE42805 GSE42805_cds_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE52385 GSE52385_siCtrl_VS_siSRA_notassemblenewgenes.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-1 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-2 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE44831 GSE44831_C57BLfab_C57BLmj_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE87890 GSE87890_vgat2_csv.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE79677 GSE79677_Crossbred_vs._Purebred_comparison_group.tabular.txt.gz conservative NA NA NA NA Bos taurus 9913 FALSE
GSE78965 GSE78965_C57Bl6_MCS_vs_FST_acute_gene_differential_expression_testing.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77032 GSE77032_combo_vs_aza.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_C_compared_to_siRbfox1_3+EGFP.txt.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE67787 GSE67787_con_bps_wex_RNAseq_gene_exp.diff.gz conservative NA NA NA NA Rattus norvegicus 10116 FALSE
GSE70283 GSE70283_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE66506 GSE66506_DE_analysis_010714.xlsx-sheet-All_Genes bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE42805 GSE42805_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE52450 GSE52450_Cuffdiff_on_pre-pro-B_and_pro-B_aligned_reads_transcript_differential_expression_testing_Bv46.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE44831 GSE44831_matrix_BALB_C57BL.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE36872 GSE36872_NascentSeq_Mouse_Liver_NormalizedGeneSignal.txt.gz spiky NA NA NA NA Mus musculus 10090 FALSE
GSE87890 GSE87890_vglut1_csv.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE98875 GSE98875_Diff.summary.xlsx-sheet-all_genes conservative NA NA NA NA Mus musculus 10090 FALSE
GSE96072 GSE96072_Galaxy106-_Cuffdiff_on_data_40__data_39_and_others_transcript_differential_expression_testing.tabular.txt.gz bimodal NA NA NA NA Enterococcus faecalis 1351 FALSE
GSE79677 GSE79677_One_by_one_comparisons.tabular.txt.gz conservative NA NA NA NA Bos taurus 9913 FALSE
GSE78965 GSE78965_C57Bl6_MCS_vs_FST_chronic_gene_differential_expression_testing.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77032 GSE77032_combo_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE73083 GSE73083_3F_Lef1_PlusversusMinusDOX_ProcessedFiles.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE79416 GSE79416_new-lncRNA_transcript_output.xls.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_N_compared_to_siRbfox1_3+EGFP.txt.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE66478 GSE66478_gene_exp.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE55090 GSE55090_cds_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE42805 GSE42805_isoform_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE50068 GSE50068_Cuffdiff_output.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE36871 GSE36871_RNASeq_Mouse_Liver_NormalizedGeneSignal.txt.gz spiky NA NA NA NA Mus musculus 10090 FALSE
GSE87890 GSE87890_vglut2_csv.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE82164 GSE82164_Cuffdiff_gene_differential_expression_testing.tabular.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE96072 GSE96072_Galaxy24-_Cuffdiff_on_data_7__data_6_and_others_transcript_differential_expression_testing.tabular.txt.gz bimodal NA NA NA NA Enterococcus faecalis 1351 FALSE
GSE77032 GSE77032_vc_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77351 GSE77351_Farshchian.txt.gz spiky NA anti-conservative 0.89 Mus musculus 10090 FALSE
GSE73082 GSE73082_F_Sp5_PlusversusMinusDOX_ProcessedFiles.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE77218 GSE77218_A3_A2.xlsx-sheet-express bimodal NA NA NA NA Vitis vinifera 29760 FALSE
GSE70766 GSE70766_Differential_expression.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE70766 GSE70766_Differential_expression.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE68160 GSE68160_GRdim-RNASeq.xlsx bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE66478 GSE66478_isoform_exp.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE55090 GSE55090_gene_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE42805 GSE42805_promoters.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE44846 GSE44846_O157_genome_total.xlsx.gz-sheet-Sheet1 bimodal NA NA NA NA Escherichia coli O157:H7 83334 FALSE
GSE33141 GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-mRNA-Transcripts-FPKM other NA NA NA NA Mus musculus 10090 FALSE
GSE33141 GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-Pseudogenes-FPKM other NA NA NA NA Mus musculus 10090 FALSE
GSE87890 GSE87890_vglut3_csv.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE96072 GSE96072_Galaxy55-_Cuffdiff_on_data_2__data_4_and_others_transcript_differential_expression_testing.tabular.txt.gz bimodal NA NA NA NA Enterococcus faecalis 1351 FALSE
GSE76771 GSE76771_ALL_gene_expression.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77218 GSE77218_A4_A2.xlsx-sheet-express bimodal NA NA NA NA Vitis vinifera 29760 FALSE
GSE70711 GSE70711_IRF4hi.vs.IRF8hi.gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE55870 GSE55870_CAF90vsNF1493.xlsx.gz conservative NA other NA Mus musculus 10090 FALSE
GSE55090 GSE55090_isoform_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE42805 GSE42805_splicing.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE82164 GSE82164_Cuffdiff_transcript_differential_expression_testing.tabular.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE58467 GSE58467_FPKM.txt.gz bimodal NA NA NA NA Enterococcus faecalis 1351 FALSE
GSE80370 GSE80370_col_morc6_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE80370 GSE80370_col_morc6_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE77218 GSE77218_A4_A3.xlsx-sheet-express bimodal NA NA NA NA Vitis vinifera 29760 FALSE
GSE70711 GSE70711_IRF8cKO_GCBCell_RPKM_exp_1.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE56966 GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_exp other NA NA NA NA Mus musculus 10090 FALSE
GSE56966 GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_notest conservative NA NA NA NA Mus musculus 10090 FALSE
GSE55090 GSE55090_tss_group_exp.diff.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE42805 GSE42805_tss_group_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_12_P-T_11_12_C conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_19_1_P-T_11_19_1_C conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_72_P-T_72_C conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE79408 GSE79408_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90876 GSE90876_Cuffdiff_PSM_vs_SM.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77113 GSE77113_GC_WT_vs_Hdac3KO.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE80370 GSE80370_col_suvh2suvh9_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE80370 GSE80370_col_suvh2suvh9_gene_exp.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE70711 GSE70711_IRF8cKO_GCBCell_RPKM_exp_2.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE67437 GSE67437_KO-ILC2-mLN_021815_vs_WT-ILC2-mLN_021815.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE56966 GSE56966_MyD88_WT.xlsx.gz-sheet-gene_exp other NA NA NA NA Mus musculus 10090 FALSE
GSE56966 GSE56966_MyD88_WT.xlsx.gz-sheet-gene_notest conservative NA NA NA NA Mus musculus 10090 FALSE
GSE51975 GSE51975_C_v_OVOL1_2_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE81055 GSE81055_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90876 GSE90876_Cuffdiff_SM_vs_SM_Dev.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE92246 GSE92246_gene_exp.diff.gz bimodal NA NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE81114 GSE81114_gene_exp.diff.gz conservative NA NA NA NA Rattus norvegicus 10116 FALSE
GSE77113 GSE77113_Hdac3KO_non-GC_vs_GC.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77675 GSE77675_Old_vs_Young_isoforms_expression.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE71527 GSE71527_KO_SNI_Sal_vs_KO_SNI_DMI.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE60642 GSE60642_AB056_2.xlsx.gz-set-0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE60642 GSE60642_AB056_2.xlsx.gz-set-1 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE60642 GSE60642_AB056_2.xlsx.gz-set-2 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE59017 GSE59017_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE57396 GSE57396_Cuttdiff_cds_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE51975 GSE51975_C_v_OVOL1_2_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE81055 GSE81055_gene_exp.diff_bias.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77229 GSE77229_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE95234 GSE95234_IPInputFPKM.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE79633 GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz spiky NA anti-conservative 0.77 Mus musculus 10090 FALSE
GSE77113 GSE77113_WT_non-GC_vs_GC.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE71527 GSE71527_KO_naive_vs_KO_SNI_Sal.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE68806 GSE68806_Galaxy_data_Cuffdiff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE67335 GSE67335_LEF1_Th1.Vs.pMIG_Th1.DESeq_Analysis_DE_Genes.txt.gz other NA other NA Mus musculus 10090 FALSE
GSE60641 GSE60641_AB03_2.xlsx.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE57227 GSE57227_PHH_GW_vs_DMSO_RNA_seq_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE59017 GSE59017_isoform_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE51975 GSE51975_C_v_OVOL1_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE84301 GSE84301_Pub_vs_Prepub.Differential_analysis_results.txt.gz conservative NA NA NA NA Capra hircus 9925 FALSE
GSE95234 GSE95234_NotInfectedInfectedFPKM.xlsx-set-0 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE95234 GSE95234_NotInfectedInfectedFPKM.xlsx-set-1 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77113 GSE77113_non-GC_WT_vs_Hdac3KO.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE86202 GSE86202_1_TreatVSControl_circRNA_differential_expression.xlsx spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE71527 GSE71527_WT_SNI_DMI_vs_KO_SNI_DMI.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE61351 GSE61351_Cont_ComparedTo_PTH_D28_CuffDiffAnalysis1.xls.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE64757 GSE64757_All_FPKMs_GEO.csv.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE54433 GSE54433_gene_exp.diff.txt.gz conservative NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE51975 GSE51975_C_v_OVOL1_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE34097 GSE34097_aff2_genes_cufflinks.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE97256 GSE97256_Y1differentialGenes.tab.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-0 other NA NA NA NA Fragaria x ananassa 3747 FALSE
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-1 other NA NA NA NA Fragaria x ananassa 3747 FALSE
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-2 other NA NA NA NA Fragaria x ananassa 3747 FALSE
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-3 other NA NA NA NA Fragaria x ananassa 3747 FALSE
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-4 other NA NA NA NA Fragaria x ananassa 3747 FALSE
GSE79758 GSE79758_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE76868 GSE76868_Table_S1_RNA-seq.xlsx bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE71527 GSE71527_WT_SNI_Sal_vs_KO_SNI_Sal.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63810 GSE63810_BCKO_RNASeq_Data.xlsx-sheet-GenesDiffExp conservative NA NA NA NA Mus musculus 10090 FALSE
GSE51975 GSE51975_C_v_OVOL2_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE34097 GSE34097_aff3_genes_cufflinks.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE83828 GSE83828_Gene_expression_data.xlsx bimodal NA NA NA NA Cyanidioschyzon merolae 45157 FALSE
GSE86202 GSE86202_Gene_differential_expression.xlsx conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE80718 GSE80718_gene_exp.diff.gz bimodal NA NA NA NA Linum usitatissimum 4006 FALSE
GSE73940 GSE73940_cuffdiff.gene_exp.diff.gz conservative NA NA NA NA Gallus gallus 9031 FALSE
GSE71527 GSE71527_WT_SNI_Sal_vs_WT_SNI_DMI.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE51975 GSE51975_C_v_OVOL2_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE44536 GSE44536_GEO_Processed_file_excel.xlsx.gz-sheet-FPKM_NC_009338 bimodal NA NA NA NA Mycolicibacterium gilvum PYR-GCK 350054 FALSE
GSE34097 GSE34097_aff4_genes_cufflinks.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE54641 GSE54641_DESeq.txt.gz conservative NA anti-conservative 0.98 Homo sapiens 9606 FALSE
GSE80349 GSE80349_results.txt.gz-set-1 conservative NA NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE73940 GSE73940_cuffdiff.isoform_exp.diff.gz conservative NA NA NA NA Gallus gallus 9031 FALSE
GSE71527 GSE71527_WT_naive_vs_KO_naive.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE71252 GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-geneExpDiffData bimodal NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE71252 GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-isoformExpDiffData bimodal NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE65025 GSE65025_WT-HSF_gene_exp.diff.gz conservative NA NA NA NA Oryza sativa Japonica Group 39947 FALSE
GSE54641 GSE54641_cuffdiff2_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE61969 GSE61969_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE61969 GSE61969_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE55682 GSE55682_16h.xls.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE72105 GSE72105_Differential_Gene_Expression_Summary_D0.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE72994 GSE72994_cds_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE71527 GSE71527_WT_naive_vs_WT_SNI_Sal.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE59481 GSE59481_PIG_vs_GFP_DE_genes.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE65024 GSE65024_WT-bhlh_gene_exp.diff.gz bimodal NA NA NA NA Oryza sativa Japonica Group 39947 FALSE
GSE61238 GSE61238_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE58326 GSE58326_gene_exp.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE41908 GSE41908_E11.5_E13.5f_cuffdiff1.2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE98759 GSE98759_gene_exp.txt.gz other NA other NA Mus musculus 10090 FALSE
GSE76865 GSE76865_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE81059 GSE81059_cns-control_vs_cns-hh.csv.gz conservative NA other NA Schmidtea mediterranea 79327 FALSE
GSE55682 GSE55682_20h.xls.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE72105 GSE72105_Differential_Gene_Expression_Summary_D6.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE72994 GSE72994_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65328 GSE65328_A17_6V.tab.gz conservative NA anti-conservative 0.92 Medicago truncatula 3880 FALSE
GSE65022 GSE65022_cuffdiff-WT_CD_gene_exp.diff.gz bimodal NA NA NA NA Oryza sativa Japonica Group 39947 FALSE
GSE41908 GSE41908_E11.5_E13.5m_cuffdiff1.2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE93280 GSE93280_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE76864 GSE76864_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE81059 GSE81059_cns-control_vs_cns-ptc.csv.gz conservative NA other NA Schmidtea mediterranea 79327 FALSE
GSE86159 GSE86159_significance_calls_genes_overexpression.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE55682 GSE55682_24h.xls.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE72105 GSE72105_Differential_Gene_Expression_Summary_myotubes.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72994 GSE72994_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE59020 GSE59020_ETS1_gene_exp_all.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE41908 GSE41908_E9.5_E11.5_cuffdiff1.2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE95481 GSE95481_GCN5_RNAi_vs_WT_root_tip_gene_exp.diff.gz conservative NA NA NA NA Oryza sativa Japonica Group 39947 FALSE
GSE86159 GSE86159_significance_calls_genes_tam_timecourse.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE78902 GSE78902_DEseq_DB001-DB004_DB002-DB003_DEG_list.csv.gz other NA other NA Mus musculus 10090 FALSE
GSE78996 GSE78996_CTR_vs_EAE_Cuffdiff_analysis.xlsx bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE55682 GSE55682_48h.xls.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE53040 GSE53040_wtDMSOvswtD1.txt.gz bimodal NA NA NA NA Neurospora crassa 5141 FALSE
GSE72105 GSE72105_Differential_Gene_Expression_Summary_usp10.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72994 GSE72994_promoters.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE59020 GSE59020_U0126_gene_exp_all.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-0 bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-1 bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-2 bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-3 bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE95481 GSE95481_GCN5_RNAi_vs_WT_whole_root_gene_exp.diff.gz conservative NA NA NA NA Oryza sativa Japonica Group 39947 FALSE
GSE95850 GSE95850_RUCA-I_WT_vs_miR-203_KO_gene_expression.csv.gz other NA NA NA NA Rattus norvegicus 10116 FALSE
GSE86187 GSE86187_p0wt-ko-gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE93280 GSE93280_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE72762 GSE72762_DEseq_LS023-LS024-LS025_LS030-LS031-LS032_DEG_list.txt.gz conservative NA other NA Mus musculus 10090 FALSE
GSE72059 GSE72059_21_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE55682 GSE55682_Baf250a6days.csv.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE53040 GSE53040_wtDMSOvswtTX129.txt.gz conservative NA NA NA NA Neurospora crassa 5141 FALSE
GSE72994 GSE72994_tss_group_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE69113 GSE69113_AIPVUIP_differential_expression.txt.gz other NA NA NA NA Sus scrofa 9823 FALSE
GSE47095 GSE47095_splicing_diff.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE86187 GSE86187_p6wt-ko_gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE81007 GSE81007_cds.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE72761 GSE72761_DESeq_LS007-LS008-LS010_LS015-LS016-LS018_DEG_list.txt.gz conservative NA other NA Mus musculus 10090 FALSE
GSE53040 GSE53040_wtDMSOvswtTX34.txt.gz bimodal NA NA NA NA Neurospora crassa 5141 FALSE
GSE69113 GSE69113_BIPVUIP_differential_expression.txt.gz other NA NA NA NA Sus scrofa 9823 FALSE
GSE49843 GSE49843_gene_exp.diff_22345-22353.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0 bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1 spiky NA NA NA NA Gallus gallus 9031 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2 spiky NA NA NA NA Gallus gallus 9031 FALSE
GSE43614 GSE43614_diff_out.txt.gz other NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE98739 GSE98739_Q111SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE80503 GSE80503_RNASeqProcessedDESeqData.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72764 GSE72764_DEseq_LS39-LS40-LS42_LS44-LS45-LS48_DEG_list.csv.gz conservative NA other NA Mus musculus 10090 FALSE
GSE77499 GSE77499_Dd2CQ_Dd2_3D7_gene_exp.diff.gz conservative NA NA NA NA Plasmodium falciparum 5833 FALSE
GSE53040 GSE53040_wtDMSOvswtTX87.txt.gz conservative NA NA NA NA Neurospora crassa 5141 FALSE
GSE61202 GSE61202_NICvsMOdifferential_expression.txt.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE58464 GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-0 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE58464 GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-1 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0 spiky NA NA NA NA Gallus gallus 9031 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1 spiky NA NA NA NA Gallus gallus 9031 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2 spiky NA NA NA NA Gallus gallus 9031 FALSE
GSE33782 GSE33782_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE98739 GSE98739_Q7SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01dT other NA NA NA NA Pseudomonas aeruginosa 287 FALSE
GSE81007 GSE81007_cds_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE87635 GSE87635_CNOT3KO-WT.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77499 GSE77499_Dd2CQ_Dd2_3D7_isoform_exp.diff.gz conservative NA NA NA NA Plasmodium falciparum 5833 FALSE
GSE66158 GSE66158_all_genes_FPKM.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE56284 GSE56284_gene_exp.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE53976 GSE53976_gene_exp.diff.txt.gz conservative NA NA NA NA Gallus gallus 9031 FALSE
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-0 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-0 spiky NA NA NA NA Gallus gallus 9031 FALSE
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-1 spiky NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-1 spiky NA NA NA NA Gallus gallus 9031 FALSE
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-2 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-2 bimodal NA NA NA NA Gallus gallus 9031 FALSE
GSE33782 GSE33782_isoform_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE98739 GSE98739_Q7SST_vs_Q111SST_DEGs_with_fpkm.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE77769 GSE77769_RNA_diff_final.txt.gz spiky NA NA NA NA Mus musculus 10090 FALSE
GSE81007 GSE81007_gene_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE36005 GSE36005_emo_gene.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Rb_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE82210 GSE82210_cuffdiff_lncOL1KO_vs_Ctrl.gene.fpkm.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE83137 GSE83137_H2_vs_Lanact_pval.csv.gz other NA other NA Streptomyces albus 1888 FALSE
GSE58586 GSE58586_RNAseq-PDX-paired-tr-vs-untr_allintensity-filtered.txt.gz other NA NA NA NA Homo sapiens 9606 FALSE
GSE49147 GSE49147_ESC_KO_vs_WT.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE36005 GSE36005_res_gene.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE32038 GSE32038_cds_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Rb_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE91075 GSE91075_gene_exp_WT1_KO1.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE81007 GSE81007_isoform_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE49147 GSE49147_iPS_PF1_vs_PF2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE36005 GSE36005_sus_gene.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE32038 GSE32038_gene_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Rb_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE91075 GSE91075_gene_exp_WT2_KO2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77185 GSE77185_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE74148 GSE74148_RNA-seq0415.xlsx-set-0 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE74148 GSE74148_RNA-seq0415.xlsx-set-1 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE74148 GSE74148_RNA-seq0415.xlsx-set-2 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE74148 GSE74148_RNA-seq0415.xlsx-set-3 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE74148 GSE74148_RNA-seq0415.xlsx-set-4 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE74148 GSE74148_RNA-seq0415.xlsx-set-5 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE58609 GSE58609_MEF_WT_DKO.deseq.txt.gz-set-0 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE58609 GSE58609_MEF_WT_DKO.deseq.txt.gz-set-1 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE71948 GSE71948_RNASeqProcessedDESeqData.txt.gz conservative NA other NA Mus musculus 10090 FALSE
GSE49147 GSE49147_iPS_TTF1_vs_TTF2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_24.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE81007 GSE81007_promoters.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE65321 GSE65321_RNASeqProcessedDESeqData.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE63750 GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz bimodal NA other NA Staphylococcus aureus 1280 FALSE
GSE63750 GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz bimodal NA other NA Staphylococcus aureus 1280 FALSE
GSE58405 GSE58405_gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE32038 GSE32038_isoform_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE73972 GSE73972_atxvsWT_gene_exp_diff.txt.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE93620 GSE93620_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE81007 GSE81007_splicing.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE78878 GSE78878_30Cvs30P_score.txt.gz bimodal NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE64854 GSE64854_cds.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65321 GSE65321_RNASeqProcessedDESeqData_GSM1631482-GSM1631483.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63555 GSE63555_Ago2_immunoprecipitation_cuffdiff_fpkm.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE63750 GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz other NA other NA Staphylococcus aureus 1280 FALSE
GSE63750 GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz other NA other NA Staphylococcus aureus 1280 FALSE
GSE58405 GSE58405_isoform_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE53022 GSE53022_mt_vs_wt.DESeq.txt.gz conservative NA other NA Danio rerio 7955 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE81007 GSE81007_tss_group_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE78878 GSE78878_30CvsN2C_score.txt.gz bimodal NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE80433 GSE80433_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-gene_exp bimodal NA NA NA NA Tetrahymena thermophila 5911 FALSE
GSE64854 GSE64854_cds_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE63555 GSE63555_Gene_expression_cuffdiff_fpkm.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE50557 GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE50557 GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE92989 GSE92989_Drought_2_days.txt.gz conservative NA NA NA NA Oryza sativa 4530 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_Global.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE74929 GSE74929_ANOVA_gene_rpkm.txt.gz-set-0 other NA NA NA NA Danio rerio 7955 FALSE
GSE74929 GSE74929_ANOVA_gene_rpkm.txt.gz-set-1 other NA NA NA NA Danio rerio 7955 FALSE
GSE79507 GSE79507_minipig.txt.gz bimodal NA NA NA NA Sus scrofa 9823 FALSE
GSE81100 GSE81100_old_ARSER_output.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE61336 GSE61336_results_167_vs_WTL.txt.gz bimodal NA anti-conservative 0.42 Burkholderia cenocepacia 95486 FALSE
GSE78878 GSE78878_30PvsN2P_score.txt.gz bimodal NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE85576 GSE85576_Supplementary_Table_1.xlsx-sheet-MagohMos2_vs_Control conservative NA NA NA NA Mus musculus 10090 FALSE
GSE84606 GSE84606_gene_exp.diff.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-C2vWT-2hr genes bimodal NA NA NA NA Tetrahymena thermophila 5911 FALSE
GSE64854 GSE64854_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE71284 GSE71284_control_WT2_WT3_C1_C2_vs_truncation_3kb1_3kb2_100kb1_100kb2_CUFFDIFF_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE59290 GSE59290_ANTI_isoform_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE54246 GSE54246_Control_vs._4_NQO_Tongue_gene_exp.xlsx.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE52367 GSE52367_Cuflinks_2338_2339.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE51847 GSE51847_Expression_table_LE-2_x_HR-3.txt.gz conservative NA NA NA NA Schistosoma mansoni 6183 FALSE
GSE92989 GSE92989_Drought_3_days.txt.gz conservative NA NA NA NA Oryza sativa 4530 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Rv_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE93870 GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES spiky NA anti-conservative 0.88 Homo sapiens 9606 FALSE
GSE93870 GSE93870_processed_file.xlsx-sheet-BJ_ZIKV.Vs.BJ_Control.DESeq_Ana spiky NA anti-conservative 0.96 Homo sapiens 9606 FALSE
GSE93870 GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq spiky NA anti-conservative 0.81 Homo sapiens 9606 FALSE
GSE93870 GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq spiky NA anti-conservative 0.48 Homo sapiens 9606 FALSE
GSE93870 GSE93870_processed_file.xlsx-sheet-ZIKV.Vs.Control.DESeq_Analysis_ spiky NA spiky NA Homo sapiens 9606 FALSE
GSE80597 GSE80597_Processed_data_cuffdiff_output.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE80597 GSE80597_Processed_data_cuffdiff_output.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE61336 GSE61336_results_167_vs_WTZ.txt.gz bimodal NA anti-conservative 0.41 Burkholderia cenocepacia 95486 FALSE
GSE83406 GSE83406_gene_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE78878 GSE78878_N2CvsN2P_score.txt.gz spiky NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE80301 GSE80301_col_rep1_mom1_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-gene_exp bimodal NA NA NA NA Tetrahymena thermophila 5911 FALSE
GSE64854 GSE64854_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE61033 GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz bimodal NA anti-conservative 0.71 Mus musculus 10090 FALSE
GSE64455 GSE64455_cuffdiff_out.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE66232 GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep1.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE59290 GSE59290_MIR_isoform_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE57680 GSE57680_RPKM_luminal_epithelium.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE32038 GSE32038_tss_group_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Rv_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE93206 GSE93206_Processed_data_files.xlsx-set-0 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE93206 GSE93206_Processed_data_files.xlsx-set-1 spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE77037 GSE77037_gene_exp.diff.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE61336 GSE61336_results_WTL_vs_WTZ.txt.gz conservative NA anti-conservative 0.99 Burkholderia cenocepacia 95486 FALSE
GSE76533 GSE76533_leaf.gene_exp.diff.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE83555 GSE83555_WT-KO-mm9-gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE80301 GSE80301_col_rep1_nrpe1_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-3hr_RNA-Seq.xlsx bimodal NA NA NA NA Tetrahymena thermophila 5911 FALSE
GSE64854 GSE64854_promoters.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE61033 GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz bimodal NA anti-conservative 0.86 Mus musculus 10090 FALSE
GSE57254 GSE57254_Control_CELF1KD_abundances.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE66232 GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE52201 GSE52201_RNAseq_processed_data_L_D_siLSD1.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE57680 GSE57680_RPKM_stroma.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE58360 GSE58360_Cebpa.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE50424 GSE50424_Adipose.tsv.gz conservative NA NA NA NA Rattus norvegicus 10116 FALSE
GSE52038 GSE52038_Supplementary-table-1-date11021.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Rv_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE76533 GSE76533_seedling.gene_exp.diff.gz conservative NA NA NA NA Zea mays 4577 FALSE
GSE80301 GSE80301_col_rep1_pial1pial2_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE64854 GSE64854_splicing.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE70544 GSE70544_Normoxia_vs_Hypoxia_Gencode_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE58359 GSE58359_HOXA9.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE50424 GSE50424_Liver.tsv.gz conservative NA NA NA NA Rattus norvegicus 10116 FALSE
GSE42381 GSE42381_gene_exp.diff.gz bimodal NA NA NA NA Rhodococcus opacus 37919 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Sb_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE80301 GSE80301_col_rep2_mom1_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE64854 GSE64854_tss_group_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE70544 GSE70544_Normoxia_vs_Hypoxia_Rinn_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE58379 GSE58379_RBM47_alternative_splicing.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C1_WtE8.0_Vs_Wt10.0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C2_Wt_VS_ Tc E8.0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C3_Wt_VS_Tc_E10.0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C4_TcE8.0_VS_TcE10.0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE37111 GSE37111_clip.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE37111 GSE37111_clip.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Sb_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_v Vehicle_12dP-MI other NA NA NA NA Mus musculus 10090 FALSE
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Vehicle_12dP-MI uniform NA NA NA NA Mus musculus 10090 FALSE
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Sfrp2_12dP-MI uniform NA NA NA NA Mus musculus 10090 FALSE
GSE80301 GSE80301_col_rep2_mom1pial2_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE71943 GSE71943_KO_vs_WT_diffGenes.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE70544 GSE70544_Vehicle_vs_Cytokine_Gencode_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE66716 GSE66716_Lim_et_al_14-3-3zKOWAT_Processed_data_Cuffdiff.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE67674 GSE67674_RNA-seq_analysis_AADMSOvsAAGSK-J4.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Sb_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE80301 GSE80301_col_rep2_pial2_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE71281 GSE71281_G53_veh_vs_SAA_Th17_CuffDiff_Gene_Differential.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70544 GSE70544_Vehicle_vs_Cytokine_Rinn_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE67554 GSE67554_TAG5_Cuffdiff_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA Eucalyptus grandis 71139 FALSE
GSE98541 GSE98541_RPE1_diff_expression_WT_SAFA.xlsx conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_24.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE76232 GSE76232_isoforms.diff_exp_ann_result.xls.gz conservative NA NA NA NA Ovis aries 9940 FALSE
GSE67554 GSE67554_ZG14_Cuffdiff_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA Eucalyptus grandis 71139 FALSE
GSE61851 GSE61851_genelist-sortedbypadj.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE44665 GSE44665_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE81100 GSE81100_youngARSER_output.txt.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE76151 GSE76151_A1_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE72917 GSE72917_DP1_WTvKO.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70860 GSE70860_DEaxons.csv.gz spiky NA anti-conservative 0.21 Rattus norvegicus 10116 FALSE
GSE68102 GSE68102_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE63570 GSE63570_Rec_siRNA_RNA-seq.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65542 GSE65542_pnky_kd.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE40948 GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE40948 GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE81123 GSE81123_Poplar_RNAseq_data.ods.txt.gz conservative NA NA NA NA Populus tremula x Populus alba 80863 FALSE
GSE71988 GSE71988_gene_exp.diff.gz conservative NA NA NA NA Bombyx mori 7091 FALSE
GSE76151 GSE76151_A2B1A1_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE71609 GSE71609_2015_MZT.txt.gz-set-0 bimodal NA NA NA NA Danio rerio 7955 FALSE
GSE71609 GSE71609_2015_MZT.txt.gz-set-1 conservative NA NA NA NA Danio rerio 7955 FALSE
GSE71609 GSE71609_2015_MZT.txt.gz-set-2 conservative NA NA NA NA Danio rerio 7955 FALSE
GSE71609 GSE71609_2015_MZT.txt.gz-set-3 bimodal NA NA NA NA Danio rerio 7955 FALSE
GSE71609 GSE71609_2015_MZT.txt.gz-set-4 bimodal NA NA NA NA Danio rerio 7955 FALSE
GSE69311 GSE69311_deseq_diff_genes.csv.gz bimodal NA anti-conservative 0.79 Mus musculus 10090 FALSE
GSE72917 GSE72917_DP2_WTvKO.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70860 GSE70860_DEsoma.csv.gz other NA other NA Rattus norvegicus 10116 FALSE
GSE65542 GSE65542_ptbp1_kd.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE58910 GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz bimodal NA anti-conservative 0.69 Homo sapiens 9606 FALSE
GSE44668 GSE44668_gene_exp_diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_Global.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE76151 GSE76151_A2B1_isoform_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65142 GSE65142_HYBP.txt.gz bimodal NA NA NA NA Raphanus sativus 3726 FALSE
GSE76190 GSE76190_OtA8535_vs_OtA8538_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63838 GSE63838_cds_exp_diff_2D.txt.gz conservative NA NA NA NA Solanum pimpinellifolium 4084 FALSE
GSE72917 GSE72917_KO_DP1vDP2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE52153 GSE52153_wtDMSOvsczt-1DMSO.txt.gz bimodal NA NA NA NA Neurospora crassa 5141 FALSE
GSE40228 GSE40228_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Sv_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP_VS_LL-YY conservative NA NA NA NA Sus scrofa 9823 FALSE
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP conservative NA NA NA NA Sus scrofa 9823 FALSE
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-LL-YY conservative NA NA NA NA Sus scrofa 9823 FALSE
GSE79680 GSE79680_Heat_shock_table.csv.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE76190 GSE76190_OtA8536_vs_OtA8539_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72917 GSE72917_WT_DP1vDP2.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE69175 GSE69175_gene_exp.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE60822 GSE60822_cuffdiff.control.ablation.tab.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE53789 GSE53789_GFP_FACS_x_GFP_LCM-not_significant.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE51144 GSE51144_all_exons.txt.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE98387 GSE98387_gene_exp.txt.gz other NA other NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Sv_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE52911 GSE52911_gene_exp.txt.gz conservative NA NA NA NA Citrus maxima 37334 FALSE
GSE76683 GSE76683_shHOXA7gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE79779 GSE79779_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65142 GSE65142_YH.txt.gz bimodal NA NA NA NA Raphanus sativus 3726 FALSE
GSE76190 GSE76190_OtA8537_vs_OtA8540_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE60822 GSE60822_cuffdiff.control.induction.tab.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE53789 GSE53789_GFP_FACS_x_WT_FACS-not_significant.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE41487 GSE41487_ResultsContr123vsRas123Multiple.xls.gz-sheet-RawData Contr123 vs Ras123 conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_Sv_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE80237 GSE80237_Supplementary_Data_1.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE76682 GSE76682_EB_AM580gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE75878 GSE75878_cds.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE65987 GSE65987_FPKM_for_MEFs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE76190 GSE76190_OtA8538_vs_OtA8541_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE60822 GSE60822_cuffdiff.induction.ablation.tab.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE53789 GSE53789_GFP_LCM_gt_GFP_FACS_gene_exp_with_zeros.diff.txt.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE50203 GSE50203_gene_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE41487 GSE41487_ResultsContr123vsRas12Multiple.xls.gz-sheet-RawData Contr123 vs Ras12 conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_24.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE86323 GSE86323_gene_exp.diff.txt.gz conservative NA NA NA NA Bos taurus 9913 FALSE
GSE85308 GSE85308_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75878 GSE75878_cds_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE76190 GSE76190_OtA8539_vs_OtA8542_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE71164 GSE71164_SCR-static_vs_SCR-FSS.tabular.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE53789 GSE53789_GFP_LCM_gt_WT_FACS_gene_exp_with_zeros.diff.txt.gz other NA NA NA NA Mus musculus 10090 FALSE
GSE50203 GSE50203_isoform_exp.diff.gz conservative NA NA NA NA Danio rerio 7955 FALSE
GSE56575 GSE56575_cds_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE41090 GSE41090_WT_vs_KO_full_genes.tab.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE39812 GSE39812_FT_result_transcript_summary.tsv.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE94967 GSE94967_cds_exp.diff_A_B_CDS.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE69205 GSE69205_gene_exp.txt.gz conservative NA NA NA NA Homo sapiens 9606 TRUE
GSE72820 GSE72820_MDA1N-1P_RPKM.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE85308 GSE85308_processed_data.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75878 GSE75878_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE76190 GSE76190_OtA8540_vs_OtA8543_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE71164 GSE71164_SCR-static_vs_SH-EZH2-static.tabular.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE53789 GSE53789_GFP_LCM_x_GFP_FACS-not_significant.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE56097 GSE56097_Cufflinks_CuffDiff_gene_exp.txt.gz conservative NA NA NA NA Cavia porcellus 10141 FALSE
GSE49097 GSE49097_BetweenGenotypes_gene_exp.diff.gz conservative NA NA NA NA Glycine max 3847 FALSE
GSE84158 GSE84158_gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE94967 GSE94967_gene_exp.diff_A_B_GENE.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE62040 GSE62040_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE72820 GSE72820_MDA27N-27P_RPKM.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE75878 GSE75878_isoform_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70068 GSE70068_GM_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE72560 GSE72560_Enteric_Glia.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE53789 GSE53789_GFP_LCM_x_WT_FACS-not_significant.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE49097 GSE49097_CompareAll_gene_exp.diff.gz conservative NA NA NA NA Glycine max 3847 FALSE
GSE39812 GSE39812_TB_result_transcript_summary.tsv.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE94967 GSE94967_isoform_exp.diff_A_B_ISOFORM.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_Global.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE77395 GSE77395_A_OE_air_vs_Col_air.diff.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE72820 GSE72820_MDA2N-2P_RPKM.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE70815 GSE70815_gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE76992 GSE76992_GFP_vs_p16.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE74868 GSE74868_ETS2_T72D_OE_Epi_RNAseq.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE60701 GSE60701_AL_R_vs_AL_L.diff_expressed_transcripts.tsv.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49097 GSE49097_Within_A_gene_exp.diff.gz conservative NA NA NA NA Glycine max 3847 FALSE
GSE94967 GSE94967_tss_group_exp.diff_A_B_TSS.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Rb_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE77395 GSE77395_col_air_vs_ethylene.diff.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE72820 GSE72820_MDA31N-31P_RPKM.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE75833 GSE75833_DESeq-processed_FB.control_vs_FB.25mkM.4HT.txt.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE77256 GSE77256_Cuffdiff_Anagen_HFSCs.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE70068 GSE70068_TNF_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE60701 GSE60701_ChL_R_vs_AL_R.diff_expressed_transcripts.tsv.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49097 GSE49097_Within_B_gene_exp.diff.gz conservative NA NA NA NA Glycine max 3847 FALSE
GSE39605 GSE39605_All_KOvsWT_filtered_final.xlsx.gz-sheet-All_KOvsWT_filtered conservative NA other NA Mus musculus 10090 FALSE
GSE39652 GSE39652_20111201c2Day3_gene_exp.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE39652 GSE39652_20111201c2Day3_gene_exp.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Rb_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE87808 GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz spiky NA anti-conservative 0.83 Mus musculus 10090 FALSE
GSE79412 GSE79412_amiFPSa_gene_exp_diff.xlsx-sheet-Hoja1 conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE73192 GSE73192_cds_chromosome_exp.diff.gz bimodal NA NA NA NA Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 99287 FALSE
GSE72820 GSE72820_MDA33N-33P_RPKM.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE84786 GSE84786_isoform_exp.xlsx-sheet-isoform_exp conservative NA NA NA NA Mus musculus 10090 FALSE
GSE84786 GSE84786_isoform_exp.xlsx-sheet-Fold change conservative NA NA NA NA Mus musculus 10090 FALSE
GSE75878 GSE75878_tss_group_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE77256 GSE77256_Cuffdiff_Telogen_HFSCs.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70108 GSE70108_G263_CuffDiff_WTvsDDX5Tko.tabular.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE62909 GSE62909_Differential_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE72178 GSE72178_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE53789 GSE53789_WT_FACS_x_GFP_FACS-not_significant.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE61031 GSE61031_DE_polyaWT_vs_polyaKO.txt.gz bimodal NA anti-conservative 0.84 Mus musculus 10090 FALSE
GSE60701 GSE60701_ChL_R_vs_ChL_L.diff_expressed_transcripts.tsv.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49097 GSE49097_Within_WT_gene_exp.diff.gz conservative NA NA NA NA Glycine max 3847 FALSE
GSE57517 GSE57517_gene_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE56058 GSE56058_differentialExpressionGenes_RD19.txt.gz other NA NA NA NA Deinococcus deserti 310783 FALSE
GSE39652 GSE39652_20111201c2LZ_gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE39652 GSE39652_20111201c2LZ_gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE83217 GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siHdac4 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE83217 GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siBdnf conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Rb_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE84308 GSE84308_RNA.txt.gz spiky NA NA NA NA Mus musculus 10090 FALSE
GSE76287 GSE76287_rosettes_col0vdko_tair.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE72820 GSE72820_MDA34N-34P_RPKM.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE86077 GSE86077_N2_EVvs28_D4.diff.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE77256 GSE77256_Cuffdiff_all_HFSCs.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE72830 GSE72830_gene_exp.diff.gz bimodal NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE70108 GSE70108_G340_CuffDiff_WTvsRORgko.tabular.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70068 GSE70068_UT_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE53789 GSE53789_WT_FACS_x_GFP_LCM-not_significant.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE39652 GSE39652_20111201c2Pach_gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE39652 GSE39652_20111201c2Pach_gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_24.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE76287 GSE76287_seedling_col0vdko_tair.txt.gz bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE72820 GSE72820_MDA3N-3P_RPKM.xlsx.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE86077 GSE86077_glp-1_EVvs28_D4.diff.gz conservative NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE84798 GSE84798_gene_exp.diff.gz conservative NA NA NA NA Brassica napus 3708 FALSE
GSE80972 GSE80972_frm_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70785 GSE70785_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE72830 GSE72830_tss_group_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE72787 GSE72787_deseq2_closed_vs_open.tsv.gz spiky NA NA NA NA Rattus norvegicus 10116 FALSE
GSE69855 GSE69855_gene_exp_ResvResVag.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE53789 GSE53789_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE52080 GSE52080_processed_data.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE55596 GSE55596_LOLOdiff_nonovel.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE39652 GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE39652 GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs WT other NA other NA Drosophila melanogaster 7227 FALSE
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PM vs WT other NA other NA Drosophila melanogaster 7227 FALSE
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs PM other NA other NA Drosophila melanogaster 7227 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE83601 GSE83601_All_genes_in_controls_and_PTSD.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_15-20_mm bimodal NA NA NA NA Postia placenta 104341 FALSE
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_30-35_mm bimodal NA NA NA NA Postia placenta 104341 FALSE
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_30-35_mm_vs_15-20_mm conservative NA NA NA NA Postia placenta 104341 FALSE
GSE72947 GSE72947_Dm_sir2_RNA-seq.xlsx-sheet-Analyzed Genes conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE64747 GSE64747_deseq_comp_DMSO_minus_TEX_vs_compound59_minus_TEX_with_annot_and_counts.txt.gz conservative NA NA NA NA Staphylococcus aureus 1280 FALSE
GSE72321 GSE72321_annotated_diffana_6-OHDA-6-OHDA_En.xlsx conservative NA other NA Mus musculus 10090 FALSE
GSE69855 GSE69855_gene_exp_ResvSham.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE55596 GSE55596_alldiff_nonovel.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Transient spiky NA other NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE81191 GSE81191_Cuffdiff_Isoform.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE86521 GSE86521_DESeq_out_KO_vs_WT.txt.gz bimodal NA anti-conservative 0.74 Mus musculus 10090 FALSE
GSE72321 GSE72321_annotated_diffana_gain-of-function_En1-ipsi-contra.xlsx conservative NA spiky NA Mus musculus 10090 FALSE
GSE71153 GSE71153_projectLindholmPerry_USDA0001AL_master_list.txt.gz spiky NA NA NA NA Bos taurus 9913 FALSE
GSE69900 GSE69900_control-CBD16H.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE51119 GSE51119_IBH1KD_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_Global.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE81191 GSE81191_Cuffdiff_transcript.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE76487 GSE76487_shMBNL1_gene_exp_diff.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE72321 GSE72321_annotated_diffana_loss-of-function_En1LacZ-WT.xlsx conservative NA spiky NA Mus musculus 10090 FALSE
GSE69900 GSE69900_control-tamoxifen48H.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE62633 GSE62633_Differential_expression_table.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE46046 GSE46046_GenesTable.txt.gz spiky NA anti-conservative 0.93 Gallus gallus 9031 FALSE
GSE51119 GSE51119_IBH1ox_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE40218 GSE40218_processed_DESeq.txt.gz bimodal NA anti-conservative 0.89 Homo sapiens 9606 FALSE
GSE40218 GSE40218_processed_DESeq.txt.gz bimodal NA anti-conservative 0.89 Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Rv_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE87532 GSE87532_gene_exp.diff.name.txt.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE84370 GSE84370_APC_0h_vs_1h_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE86248 GSE86248_shControl-vs-shPaf1-gene_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE60691 GSE60691_processed_data_aso_wild_type.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE72341 GSE72341_DEseq_results.xlsx bimodal NA spiky NA Mus musculus 10090 FALSE
GSE62760 GSE62760_Acute_Cuffdiff_DGE.txt.gz bimodal NA NA NA NA Rattus norvegicus 10116 FALSE
GSE59781 GSE59781_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE61566 GSE61566_cds.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE51119 GSE51119_bHLH159KD_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE36866 GSE36866_gene_exp.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE97258 GSE97258_differential_expression.xls.gz-sheet-Sheet1 bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE97258 GSE97258_differential_expression.xls.gz-sheet-Sheet1 bimodal NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Rv_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE84370 GSE84370_APC_0h_vs_2h_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE76396 GSE76396_isoform_exp.diff.gz conservative NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE86248 GSE86248_shControl-vs-shPhf5a-gene_exp_1_.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE69556 GSE69556_cds_exp.diff.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE60691 GSE60691_processed_data_krkr_sumo_mut.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE62760 GSE62760_Chronic_Cuffdiff_DGE.txt.gz bimodal NA NA NA NA Rattus norvegicus 10116 FALSE
GSE51119 GSE51119_bHLH159ox_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA Arabidopsis thaliana 3702 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4 conservative NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8 bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE49587 GSE49587_L2_L3P1_2_DEUtable.txt.gz other NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE98650 GSE98650_mb1_hdac3_cuffdiff_out.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Rv_36v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE93866 GSE93866_IDOE_GENE_EXPRESSION.xlsx conservative NA NA NA NA Mus musculus 10090 FALSE
GSE70699 GSE70699_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE68460 GSE68460_WSVSBS_gene_diff.xls.gz-sheet-Sheet1 conservative NA NA NA NA Gallus gallus 9031 FALSE
GSE56122 GSE56122_IFN-gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE63884 GSE63884_gene_exp.diff_cenpk_imx372_aerobic.txt.gz uniform NA NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE61566 GSE61566_cds_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE46502 GSE46502_diff_gene_exp_PR_all.xlsx.gz-sheet-gene_exp.diff conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE49587 GSE49587_L312hr_L3P1_2_DEUtable.txt.gz other NA NA NA NA Drosophila melanogaster 7227 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Sb_24v36.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE95006 GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-0 other NA NA NA NA Helicobacter pylori J99 85963 FALSE
GSE95006 GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-1 other NA NA NA NA Helicobacter pylori J99 85963 FALSE
GSE72712 GSE72712_ESCd_40-70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-d_lt40 conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE65337 GSE65337_Nfix_KO_vs_WT_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE68460 GSE68460_gene_exp.xls.gz-sheet-Sheet1 conservative NA NA NA NA Gallus gallus 9031 FALSE
GSE65039 GSE65039_gene_exp1.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE63226 GSE63226_WRR+vsWRR-.xls.gz conservative NA NA NA NA Gallus gallus 9031 FALSE
GSE61566 GSE61566_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE50156 GSE50156_WT_36oC_15min_AND_WT_24oC.txt.gz conservative NA NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE47062 GSE47062_KO_vs_WT.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE90974 GSE90974_Cuffdiff_Transcript_Sb_24v48.txt.gz conservative NA NA NA NA Aedes aegypti 7159 FALSE
GSE72712 GSE72712_ESCd_40-70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-u.cuffdiff conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE77304 GSE77304_gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE78506 GSE78506_dmso_vs_ca_24Hour_geneExp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE66547 GSE66547_20150828-oocyteMut_vs_oocyteWt-deResults.xlsx-sheet-Genes conservative NA NA NA NA Mus musculus 10090 FALSE
GSE56122 GSE56122_LPS-gene_exp.diff.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE50156 GSE50156_mas5D_AND_WT_24oC.txt.gz conservative NA NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_splicing.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_splicing.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_splicing.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_splicing.diff.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE37703 GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA Homo sapiens 9606 FALSE
GSE40187 GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE40187 GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE40187 GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE40187 GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE44233 GSE44233_processed_data.txt.gz spiky NA anti-conservative 0.72 Danio rerio 7955 FALSE
GSE44233 GSE44233_processed_data.txt.gz spiky NA anti-conservative 0.72 Danio rerio 7955 FALSE
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 bimodal NA anti-conservative 0.66 Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 bimodal NA anti-conservative 0.66 Mus musculus 10090 FALSE
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky NA NA NA NA Nitrosomonas europaea 915 FALSE
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky NA NA NA NA Nitrobacter winogradskyi 913 FALSE
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky NA NA NA NA Nitrobacter winogradskyi 913 TRUE
GSE59705 GSE59705_DEXseqresultstable.txt.gz other NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE59705 GSE59705_DEXseqresultstable.txt.gz other NA NA NA NA Caenorhabditis elegans 6239 FALSE
GSE63161 GSE63161_diff-Gene-list.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE63161 GSE63161_diff-Gene-list.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE66767 GSE66767_CD34_cord_blood.EET.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE66767 GSE66767_CD34_cord_blood.EET.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE66767 GSE66767_U937.EET.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE66767 GSE66767_U937.EET.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0 other NA NA NA NA Solanum pimpinellifolium 4084 FALSE
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0 other NA NA NA NA Solanum chilense 4083 FALSE
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1 other NA NA NA NA Solanum pimpinellifolium 4084 FALSE
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1 other NA NA NA NA Solanum chilense 4083 FALSE
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky NA NA NA NA Camponotus castaneus 105051 TRUE
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky NA NA NA NA Camponotus castaneus 105051 FALSE
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky NA NA NA NA Ophiocordyceps unilateralis 268505 FALSE
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz spiky NA anti-conservative 0.64 Mus musculus 10090 FALSE
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz spiky NA anti-conservative 0.64 Mus musculus 10090 FALSE
GSE72860 GSE72860_RRBS_CpG_methylation_call.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE72860 GSE72860_RRBS_CpG_methylation_call.txt.gz bimodal NA NA NA NA Mus musculus 10090 FALSE
GSE78711 GSE78711_gene.exp.all.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE78711 GSE78711_gene.exp.all.txt.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE84875 GSE84875_human_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE84875 GSE84875_human_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE84875 GSE84875_mouse_gene_exp.diff.txt.gz conservative NA NA NA NA Homo sapiens 9606 FALSE
GSE84875 GSE84875_mouse_gene_exp.diff.txt.gz conservative NA NA NA NA Mus musculus 10090 FALSE
GSE86239 GSE86239_ETS2shRNA_gene_exp.diff.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE86239 GSE86239_ETS2shRNA_gene_exp.diff.gz spiky NA NA NA NA Homo sapiens 9606 FALSE
GSE91001 GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz spiky NA NA NA NA Escherichia coli 562 FALSE
GSE91001 GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz spiky NA NA NA NA Escherichia coli O127:H6 str. E2348/69 574521 FALSE
GSE91001 GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun spiky NA NA NA NA Escherichia coli 562 FALSE
GSE91001 GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun spiky NA NA NA NA Escherichia coli O127:H6 str. E2348/69 574521 FALSE
GSE83736 GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz anti-conservative 0.52 anti-conservative 0.30 Mus musculus 10090 FALSE
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz anti-conservative 0.67 NA NA NA Drosophila melanogaster 7227 FALSE
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative 0.76 NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative 0.76 NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE97406 GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.01 NA NA NA Escherichia coli 562 FALSE
GSE97406 GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-1 anti-conservative 0.02 NA NA NA Escherichia coli 562 FALSE
GSE83736 GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz anti-conservative 0.56 anti-conservative 0.32 Mus musculus 10090 FALSE
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz anti-conservative 0.59 NA NA NA Drosophila melanogaster 7227 FALSE
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz anti-conservative 0.29 anti-conservative 0.13 Mus musculus 10090 FALSE
GSE70290 GSE70290_PV_Transcripts.txt.gz anti-conservative 0.01 NA NA NA Arabidopsis thaliana 3702 FALSE
GSE63707 GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz anti-conservative 0.69 NA NA NA Drosophila melanogaster 7227 FALSE
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz anti-conservative 0.27 anti-conservative 0.11 Mus musculus 10090 FALSE
GSE87365 GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_and_FACS_sort_vs_Fetal_stem_cells.xls.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz anti-conservative 0.66 anti-conservative 0.59 Mus musculus 10090 FALSE
GSE67360 GSE67360_differentially_expressed_transcripts.txt.gz anti-conservative 0.00 NA NA NA Gallus gallus 9031 FALSE
GSE63707 GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz anti-conservative 0.67 NA NA NA Drosophila melanogaster 7227 FALSE
GSE97406 GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.01 NA NA NA Escherichia coli 562 FALSE
GSE97406 GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-1 anti-conservative 0.02 NA NA NA Escherichia coli 562 FALSE
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz anti-conservative 0.29 anti-conservative 0.13 Mus musculus 10090 FALSE
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz anti-conservative 0.56 anti-conservative 0.48 Mus musculus 10090 FALSE
GSE77077 GSE77077_HT_data_36hpf.xls.gz anti-conservative 0.43 NA NA NA Danio rerio 7955 FALSE
GSE59335 GSE59335_exons_sig_anno_total.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE59335 GSE59335_exons_sig_anno_total.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE33736 GSE33736_HAmCqG0_G8expression.txt.gz anti-conservative 0.60 NA NA NA Culex quinquefasciatus 7176 FALSE
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz anti-conservative 0.52 anti-conservative 0.22 Mus musculus 10090 FALSE
GSE87706 GSE87706_SM_vs_RODI.txt.gz anti-conservative 0.27 anti-conservative 0.13 Staphylococcus aureus 1280 FALSE
GSE87365 GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_vs_Fetal_myotubes.xls.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz anti-conservative 0.75 anti-conservative 0.69 Mus musculus 10090 FALSE
GSE97406 GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.01 NA NA NA Escherichia coli 562 FALSE
GSE97406 GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-1 anti-conservative 0.02 NA NA NA Escherichia coli 562 FALSE
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz anti-conservative 0.27 anti-conservative 0.11 Mus musculus 10090 FALSE
GSE87495 GSE87495_results_dds_gencode22.csv.gz anti-conservative 0.34 anti-conservative 0.15 Homo sapiens 9606 FALSE
GSE57397 GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz anti-conservative 0.38 NA NA NA Homo sapiens 9606 FALSE
GSE63707 GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz anti-conservative 0.65 NA NA NA Drosophila melanogaster 7227 FALSE
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz anti-conservative 0.52 anti-conservative 0.22 Mus musculus 10090 FALSE
GSE57397 GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz anti-conservative 0.39 NA NA NA Homo sapiens 9606 FALSE
GSE57397 GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz anti-conservative 0.34 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-2 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE57397 GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz anti-conservative 0.37 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PC3_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PC3_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PC3_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE77044 GSE77044_comparison2.xls.gz anti-conservative 0.69 anti-conservative 0.66 Entamoeba histolytica HM-1:IMSS 294381 FALSE
GSE58053 GSE58053_25mm-over-0mm.txt.gz anti-conservative 0.56 NA NA NA Nitrobacter winogradskyi 913 FALSE
GSE48812 GSE48812_24h_PREC_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PREC_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PREC_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE43650 GSE43650_gene_exp_diff_sig.txt.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE63141 GSE63141_eTMglc_gene_exp.diff.gz anti-conservative 0.95 NA NA NA Thermotoga maritima MSB8 243274 FALSE
GSE58053 GSE58053_25mm-over-1mm.txt.gz anti-conservative 0.68 NA NA NA Nitrobacter winogradskyi 913 FALSE
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE63141 GSE63141_eTMgly_gene_exp.diff.gz anti-conservative 0.78 NA NA NA Thermotoga maritima MSB8 243274 FALSE
GSE48812 GSE48812_24h_PRECvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PRECvsPC3.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_24h_PRECvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE51037 GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz anti-conservative 0.90 NA NA NA Mycobacterium tuberculosis H37Rv 83332 FALSE
GSE79830 GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz anti-conservative 0.72 NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE56346 GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz anti-conservative 0.36 anti-conservative 0.23 Phaeodactylum tricornutum 2850 FALSE
GSE48812 GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE50708 GSE50708_DE_result.txt.gz anti-conservative 0.32 NA NA NA Mus musculus 10090 FALSE
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-0 anti-conservative 0.65 NA NA NA Homo sapiens 9606 FALSE
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-1 anti-conservative 0.99 NA NA NA Homo sapiens 9606 FALSE
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-2 anti-conservative 0.82 NA NA NA Homo sapiens 9606 FALSE
GSE45788 GSE45788_S72_2_RefII_S72_1_Emf_exp.cuff.gz anti-conservative 0.83 NA NA NA Enterococcus faecalis 1351 FALSE
GSE48812 GSE48812_6h_PC3_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PC3_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PC3_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE99944 GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz anti-conservative 0.48 anti-conservative 0.34 Homo sapiens 9606 FALSE
GSE83218 GSE83218_HSC.txt.gz anti-conservative 0.88 anti-conservative 0.77 Mus musculus 10090 FALSE
GSE48812 GSE48812_6h_PREC_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PREC_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PREC_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 UP anti-conservative 0.00 anti-conservative 0.00 Homo sapiens 9606 FALSE
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 DOWN anti-conservative 0.00 anti-conservative 0.00 Homo sapiens 9606 FALSE
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 anti-conservative 0.00 anti-conservative 0.00 Homo sapiens 9606 FALSE
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 UP anti-conservative 0.01 anti-conservative 0.01 Homo sapiens 9606 FALSE
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 DOWN anti-conservative 0.01 anti-conservative 0.01 Homo sapiens 9606 FALSE
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 anti-conservative 0.01 anti-conservative 0.01 Homo sapiens 9606 FALSE
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO anti-conservative 0.78 NA NA NA Mus musculus 10090 FALSE
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ anti-conservative 0.84 NA NA NA Mus musculus 10090 FALSE
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-K27M_DMSO_x_K27M_EPZ anti-conservative 0.85 NA NA NA Mus musculus 10090 FALSE
GSE93774 GSE93774_Full_gene_list-Control_vs_KO.csv.gz anti-conservative 0.61 NA NA NA Mus musculus 10090 FALSE
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE93339 GSE93339_e125_lung_DEG.txt.gz anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative 0.37 NA NA NA Xenopus tropicalis 8364 FALSE
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative 0.37 NA NA NA Xenopus tropicalis 8364 FALSE
GSE48812 GSE48812_6h_PRECvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PRECvsPC3.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE48812 GSE48812_6h_PRECvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE83541 GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz anti-conservative 0.82 anti-conservative 0.70 Mus musculus 10090 FALSE
GSE63836 GSE63836_C15Dx_versus_Untr.DESeq.txt.gz anti-conservative 0.63 anti-conservative 0.42 Mus musculus 10090 FALSE
GSE98526 GSE98526_A12_vs_UA159T5.txt.gz anti-conservative 0.58 NA NA NA Streptococcus mutans UA159 210007 FALSE
GSE89004 GSE89004_ppGpp0_vs_H78_differential_all.xls.gz anti-conservative 0.44 anti-conservative 0.21 Pseudomonas protegens 380021 FALSE
GSE75962 GSE75962_control_vs_H2O2.DEseq.txt.gz anti-conservative 0.77 anti-conservative 0.69 Homo sapiens 9606 FALSE
GSE78824 GSE78824_Cuffdiff_transcript_differential_expression_testing.tab.gz anti-conservative 0.78 NA NA NA Cryptococcus neoformans var. grubii H99 235443 FALSE
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-0 anti-conservative 0.55 NA NA NA Homo sapiens 9606 FALSE
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-0 anti-conservative 0.55 NA NA NA Homo sapiens 9606 FALSE
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-1 anti-conservative 0.52 NA NA NA Homo sapiens 9606 FALSE
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-1 anti-conservative 0.52 NA NA NA Homo sapiens 9606 FALSE
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-2 anti-conservative 0.54 NA NA NA Homo sapiens 9606 FALSE
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-2 anti-conservative 0.54 NA NA NA Homo sapiens 9606 FALSE
GSE64242 GSE64242_cufdiff_isoform_exp.diff.gz anti-conservative 0.93 NA NA NA Brassica juncea 3707 FALSE
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-1 anti-conservative 0.39 NA NA NA Homo sapiens 9606 FALSE
GSE98526 GSE98526_A1_vs_UA159T5.txt.gz anti-conservative 0.80 NA NA NA Streptococcus mutans UA159 210007 FALSE
GSE70141 GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz anti-conservative 0.61 anti-conservative 0.38 Dictyostelium discoideum 44689 FALSE
GSE70141 GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz anti-conservative 0.22 anti-conservative 0.06 Dictyostelium discoideum 44689 FALSE
GSE84737 GSE84737_All_genes_unfiltered_DE.txt.gz anti-conservative 0.45 NA NA NA Mus musculus 10090 FALSE
GSE80176 GSE80176_HMLER_Ctrl_vs_DAC_Cuffdiff.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73893 GSE73893_DEseq-rip_significant_sites.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE98526 GSE98526_UA159T5_vs_UA159T0.txt.gz anti-conservative 0.93 NA NA NA Streptococcus mutans UA159 210007 FALSE
GSE70141 GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz anti-conservative 0.30 anti-conservative 0.15 Dictyostelium discoideum 44689 FALSE
GSE84737 GSE84737_Genes_filtered_DE.txt.gz anti-conservative 0.47 NA NA NA Mus musculus 10090 FALSE
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative 0.80 NA NA NA Homo sapiens 9606 FALSE
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative 0.80 NA NA NA Homo sapiens 9606 FALSE
GSE75147 GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz anti-conservative 0.02 NA NA NA Homo sapiens 9606 FALSE
GSE99170 GSE99170_NormalizedData.xls.gz-sheet-normalized data anti-conservative 0.00 NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE74103 GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.62 anti-conservative 0.53 Nicotiana tabacum 4097 FALSE
GSE71185 GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.38 NA NA NA Mus musculus 10090 FALSE
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative 0.82 NA NA NA Homo sapiens 9606 FALSE
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative 0.82 NA NA NA Homo sapiens 9606 FALSE
GSE93684 GSE93684_S1-1A-vs-R1-1A.compare.txt.gz anti-conservative 0.30 NA NA NA Haloxylon ammodendron 151230 FALSE
GSE74103 GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.42 anti-conservative 0.27 Nicotiana tabacum 4097 FALSE
GSE71185 GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.47 NA NA NA Mus musculus 10090 FALSE
GSE90977 GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-120 dpi anti-conservative 0.06 anti-conservative 0.01 Mus musculus 10090 FALSE
GSE90977 GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-180 dpi anti-conservative 0.10 anti-conservative 0.05 Mus musculus 10090 FALSE
GSE74103 GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.29 anti-conservative 0.23 Nicotiana tabacum 4097 FALSE
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz anti-conservative 0.90 NA NA NA Mus musculus 10090 FALSE
GSE75147 GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz anti-conservative 0.02 NA NA NA Homo sapiens 9606 FALSE
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-M VS LYP9-M anti-conservative 0.81 NA NA NA Oryza sativa 4530 FALSE
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi anti-conservative 0.54 anti-conservative 0.37 Mus musculus 10090 FALSE
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi anti-conservative 0.82 anti-conservative 0.83 Mus musculus 10090 FALSE
GSE95687 GSE95687_sleuthResults.txt.gz anti-conservative 0.71 NA NA NA Mus musculus 10090 FALSE
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.77 NA NA NA Mus musculus 10090 FALSE
GSE75147 GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE77398 GSE77398_mal_all6_cuffdiff_genes.xls.gz anti-conservative 0.76 NA NA NA Plasmodium falciparum 5833 FALSE
GSE67646 GSE67646_DESeq_1.10.1.txt.gz anti-conservative 0.67 anti-conservative 0.25 Drosophila melanogaster 7227 FALSE
GSE90478 GSE90478_Candidates_B_v_A_withNormData.csv.gz anti-conservative 0.00 anti-conservative 0.00 Mus musculus 10090 FALSE
GSE75147 GSE75147_regulated.phf5a_kd_861.up.G166.list.txt.gz anti-conservative 0.04 NA NA NA Homo sapiens 9606 FALSE
GSE54846 GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz anti-conservative 0.79 anti-conservative 0.45 Homo sapiens 9606 FALSE
GSE90478 GSE90478_Candidates_D_v_B_withNormData_CL.csv.gz anti-conservative 0.00 anti-conservative 0.00 Mus musculus 10090 FALSE
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz anti-conservative 0.78 anti-conservative 0.87 Mus musculus 10090 FALSE
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz anti-conservative 0.78 anti-conservative 0.87 Mus musculus 10090 FALSE
GSE94534 GSE94534_MSTR_gene-P005_FC1.2_FPKM2.txt.gz anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE79916 GSE79916_Dataset_S1-JUM_output_for_differential_AS_analyses_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative 0.13 NA NA NA Drosophila melanogaster 7227 FALSE
GSE78240 GSE78240_DESeq_Output.txt.gz anti-conservative 0.66 anti-conservative 0.59 Mus musculus 10090 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE80135 GSE80135_Lipo_siProx_SC_results.csv.gz anti-conservative 0.95 anti-conservative 0.82 Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE44402 GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz anti-conservative 0.23 NA NA NA Mus musculus 10090 FALSE
GSE79916 GSE79916_Dataset_S4-DESeq2_output_for_differential_overall_gene_expression_level_analysis_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative 0.00 NA NA NA Drosophila melanogaster 7227 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE72390 GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx anti-conservative 0.90 anti-conservative 0.79 Oncorhynchus keta 8018 FALSE
GSE85329 GSE85329_IGF_project_IGF_results.txt.gz anti-conservative 0.69 anti-conservative 0.55 Mus musculus 10090 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_down anti-conservative 0.76 NA NA NA Mus musculus 10090 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE56253 GSE56253_GeneSpring_NGS_processed_data.txt.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE52402 GSE52402_B19P16_B20P3_RPKM.txt.gz anti-conservative 0.63 NA NA NA Mus musculus 10090 FALSE
GSE85321 GSE85321_Supplemental_Table_4_YAR_vs_YAD_RNA_seq_.xls.gz-sheet-EV_YAD_YAR_isoformexp anti-conservative 0.46 NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE80135 GSE80135_siNeg_siProx_sig_results.csv.gz anti-conservative 0.79 anti-conservative 0.50 Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE77427 GSE77427_table_S1.xls.gz anti-conservative 0.00 NA NA NA Brassica rapa subsp. pekinensis 51351 FALSE
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S1 anti-conservative 0.50 anti-conservative 0.33 Mus musculus 10090 FALSE
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S3 anti-conservative 0.68 anti-conservative 0.46 Mus musculus 10090 FALSE
GSE71902 GSE71902_WILD-vs-CPH2.txt.gz anti-conservative 0.83 NA NA NA Candida albicans 5476 FALSE
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz anti-conservative 0.77 anti-conservative 0.59 Zea mays 4577 FALSE
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz anti-conservative 0.77 anti-conservative 0.59 Zea mays 4577 FALSE
GSE97421 GSE97421_GFP_RFP.txt.gz anti-conservative 0.57 anti-conservative 0.31 Danio rerio 7955 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE62785 GSE62785_Table_S1_Genes_differentially_expressed_in_hns_mutant_in_mid-exponential_phase.xls.gz-sheet-status = OK anti-conservative 0.86 NA NA NA Vibrio cholerae 666 FALSE
GSE97421 GSE97421_GFP_Whole.txt.gz anti-conservative 0.34 anti-conservative 0.04 Danio rerio 7955 FALSE
GSE81128 GSE81128_DESeq2_Results.txt.gz anti-conservative 0.32 anti-conservative 0.14 Tetranychus urticae 32264 FALSE
GSE71710 GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz anti-conservative 0.84 anti-conservative 0.79 Homo sapiens 9606 FALSE
GSE75731 GSE75731_ckvsd119a_gene_exp_diff.txt.gz anti-conservative 0.49 NA NA NA Staphylococcus aureus subsp. aureus str. Newman 426430 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE65072 GSE65072_DESeq_plusDOX_minusDOX.xlsx anti-conservative 0.55 NA NA NA Mus musculus 10090 FALSE
GSE62785 GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok anti-conservative 0.78 NA NA NA Vibrio cholerae 666 FALSE
GSE75731 GSE75731_ckvsdrug_gene_exp_diff.txt.gz anti-conservative 0.64 NA NA NA Staphylococcus aureus subsp. aureus str. Newman 426430 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+EGFP_compared_to_siNT+EGFP.txt.gz anti-conservative 0.96 NA NA NA Mus musculus 10090 FALSE
GSE65935 GSE65935_DKOrvsDKOnr_diffexp.txt.gz anti-conservative 0.53 NA NA NA Mus musculus 10090 FALSE
GSE33141 GSE33141_BWADETsKOvsWT2.xls.gz-sheet-DETs-FC1.5-pval0.05 anti-conservative 0.01 NA NA NA Mus musculus 10090 FALSE
GSE96626 GSE96626_DE_TrtVsVeh.xlsx anti-conservative 0.89 anti-conservative 0.87 Mus musculus 10090 FALSE
GSE85360 GSE85360_P140_Setd1b_DEGS_021015.txt.gz anti-conservative 0.00 anti-conservative 0.00 Mus musculus 10090 FALSE
GSE89773 GSE89773_combined_expression_table.txt.gz-set-0 anti-conservative 0.41 anti-conservative 0.21 Mycolicibacterium smegmatis 1772 FALSE
GSE89773 GSE89773_combined_expression_table.txt.gz-set-1 anti-conservative 0.50 anti-conservative 0.26 Mycolicibacterium smegmatis 1772 FALSE
GSE75731 GSE75731_ckvsv149a_gene_exp_diff.txt.gz anti-conservative 0.73 NA NA NA Staphylococcus aureus subsp. aureus str. Newman 426430 FALSE
GSE66506 GSE66506_DE_analysis_010714.xlsx-sheet-SigGenes anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE65935 GSE65935_WTvsDKOnr_diffexp.txt.gz anti-conservative 0.49 NA NA NA Mus musculus 10090 FALSE
GSE59814 GSE59814_processed_data.txt.gz anti-conservative 0.53 NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE65935 GSE65935_WTvsDKOr_diffexp.txt.gz anti-conservative 0.47 NA NA NA Mus musculus 10090 FALSE
GSE33141 GSE33141_TopHatDETsKOvsWT.xls.gz anti-conservative 0.01 NA NA NA Mus musculus 10090 FALSE
GSE77218 GSE77218_A3_A2.xlsx-sheet-diff_list anti-conservative 0.00 NA NA NA Vitis vinifera 29760 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48166 GSE48166_Cufflinks_FPKM.txt.gz anti-conservative 0.95 NA NA NA Homo sapiens 9606 FALSE
GSE48166 GSE48166_Cufflinks_FPKM.txt.gz anti-conservative 0.95 NA NA NA Homo sapiens 9606 FALSE
GSE77218 GSE77218_A4_A2.xlsx-sheet-diff_list anti-conservative 0.00 NA NA NA Vitis vinifera 29760 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE65973 GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz anti-conservative 0.37 anti-conservative 0.31 Mus musculus 10090 FALSE
GSE90889 GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx anti-conservative 0.69 anti-conservative 0.65 Homo sapiens 9606 FALSE
GSE92282 GSE92282_Results.csv.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE77218 GSE77218_A4_A3.xlsx-sheet-diff_list anti-conservative 0.00 NA NA NA Vitis vinifera 29760 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE74920 GSE74920_SupplementalTable1.xlsx.gz anti-conservative 0.50 anti-conservative 0.33 Mus musculus 10090 FALSE
GSE65487 GSE65487_deseq.rminus_rplus.ensembl.csv.gz anti-conservative 0.67 anti-conservative 0.32 Mus musculus 10090 FALSE
GSE97174 GSE97174_DEseq_DifferentialGeneExpression.txt.gz anti-conservative 0.00 NA NA NA Arabidopsis thaliana 3702 FALSE
GSE71539 GSE71539_TP0vsTP23_gene_results.txt.gz anti-conservative 0.86 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE74920 GSE74920_SupplementalTable3.xlsx.gz anti-conservative 0.68 anti-conservative 0.46 Mus musculus 10090 FALSE
GSE71539 GSE71539_TP0vsTP23_tag_results.txt.gz anti-conservative 0.85 NA NA NA Homo sapiens 9606 FALSE
GSE65487 GSE65487_deseq.rplus_gplus.ensembl.csv.gz anti-conservative 0.50 anti-conservative 0.19 Mus musculus 10090 FALSE
GSE54440 GSE54440_WT_Z2_RNAseq_rep2.txt.gz anti-conservative 0.51 NA NA NA Drosophila melanogaster 7227 FALSE
GSE79039 GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.62 anti-conservative 0.41 Mus musculus 10090 FALSE
GSE75993 GSE75993_processed_data.xls.gz-sheet-1_WT_vs_KO_DESeq_All anti-conservative 0.94 NA NA NA Mus musculus 10090 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE41766 GSE41766_IBH1-Ox_vs_Col.txt.gz anti-conservative 0.00 anti-conservative 0.00 Arabidopsis thaliana 3702 FALSE
GSE79039 GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.73 anti-conservative 0.52 Mus musculus 10090 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE41766 GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz anti-conservative 0.62 anti-conservative 0.29 Arabidopsis thaliana 3702 FALSE
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-5 anti-conservative 0.94 NA NA NA Fragaria x ananassa 3747 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE67334 GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz anti-conservative 0.79 anti-conservative 0.56 Mus musculus 10090 FALSE
GSE63224 GSE63224_Degradome_result.xlsx anti-conservative 0.00 NA NA NA Fragaria x ananassa 3747 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE71862 GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz anti-conservative 0.46 anti-conservative 0.45 Homo sapiens 9606 FALSE
GSE80349 GSE80349_results.txt.gz-set-0 anti-conservative 0.07 NA NA NA Schizosaccharomyces pombe 4896 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-0 anti-conservative 0.27 NA NA NA Dorcoceras hygrometricum 472368 FALSE
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-1 anti-conservative 0.16 NA NA NA Dorcoceras hygrometricum 472368 FALSE
GSE92506 GSE92506_DEseq2_wholeTable.txt.gz anti-conservative 0.64 anti-conservative 0.42 Homo sapiens 9606 FALSE
GSE47773 GSE47773_Matrix_table.txt.gz anti-conservative 0.00 NA NA NA Shewanella piezotolerans WP3 225849 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE36781 GSE36781_gene_exp_diff.txt.gz anti-conservative 0.96 NA NA NA Alternaria brassicicola 29001 FALSE
GSE40478 GSE40478_output_score.txt.gz anti-conservative 0.32 NA NA NA Mus musculus 10090 FALSE
GSE63510 GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz anti-conservative 0.54 anti-conservative 0.29 Mus musculus 10090 FALSE
GSE71093 GSE71093_a456_vs_a123_sig.txt.gz anti-conservative 0.02 NA NA NA Drosophila melanogaster 7227 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE61491 GSE61491_CHDKD_differential_expression.txt.gz anti-conservative 0.95 NA NA NA Homo sapiens 9606 FALSE
GSE57580 GSE57580_different_expressed_gene_list_between_gynoecious_vs_monoecious.txt.gz anti-conservative 0.00 NA NA NA Cucumis melo 3656 FALSE
GSE87167 GSE87167_all_genes.txt.gz anti-conservative 0.38 NA NA NA Homo sapiens 9606 FALSE
GSE61290 GSE61290_Scr_Vs_shMyb.txt.gz anti-conservative 0.04 NA NA NA Homo sapiens 9606 FALSE
GSE64359 GSE64359_DE_dfwt_combined.txt.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE37682 GSE37682_RAW.txt.gz anti-conservative 0.69 NA NA NA Candida albicans 5476 FALSE
GSE81059 GSE81059_cns-control_vs_head-control.csv.gz anti-conservative 0.51 anti-conservative 0.13 Schmidtea mediterranea 79327 FALSE
GSE66793 GSE66793_cmp1-3-geo-gene.tsv.gz anti-conservative 0.86 NA NA NA Mus musculus 10090 FALSE
GSE69001 GSE69001_DE_list_planktonic_v_biolfim.txt.gz anti-conservative 0.44 NA NA NA Clostridioides difficile R20291 645463 FALSE
GSE72293 GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-0 anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE72293 GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-1 anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-0 anti-conservative 0.66 NA NA NA Mus musculus 10090 FALSE
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-1 anti-conservative 0.58 NA NA NA Mus musculus 10090 FALSE
GSE69001 GSE69001_DE_list_planktonic_v_plate.txt.gz anti-conservative 0.33 NA NA NA Clostridioides difficile R20291 645463 FALSE
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-short 3’UTR transcripts(<350nt) anti-conservative 0.90 NA NA NA Mus musculus 10090 FALSE
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-medium 3’UTR transcripts anti-conservative 0.95 NA NA NA Mus musculus 10090 FALSE
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt) anti-conservative 0.87 NA NA NA Mus musculus 10090 FALSE
GSE67756 GSE67756_LA2A-vs-LC2A.compare.txt.gz anti-conservative 0.42 NA NA NA Larimichthys crocea 215358 FALSE
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv anti-conservative 0.61 anti-conservative 0.43 Danio rerio 7955 FALSE
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up anti-conservative 0.46 NA NA NA Danio rerio 7955 FALSE
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down anti-conservative 0.58 anti-conservative 0.48 Danio rerio 7955 FALSE
GSE69001 GSE69001_DE_list_plate_v_biofilm.txt.gz anti-conservative 0.38 NA NA NA Clostridioides difficile R20291 645463 FALSE
GSE67756 GSE67756_LA2A-vs-LC2A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA Larimichthys crocea 215358 FALSE
GSE41873 GSE41873_FPKM_all_genes_from_CuffDiff.txt.gz anti-conservative 0.74 NA NA NA Plasmodium yoelii yoelii 17XNL 352914 FALSE
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01 anti-conservative 0.93 NA NA NA Pseudomonas aeruginosa 287 FALSE
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PJ01vsPJ01dT anti-conservative 0.96 NA NA NA Pseudomonas aeruginosa 287 FALSE
GSE77025 GSE77025_gene_exp.diff.gz anti-conservative 0.35 NA NA NA Danio rerio 7955 FALSE
GSE53040 GSE53040_wtDMSOvswtXP13.txt.gz anti-conservative 0.69 NA NA NA Neurospora crassa 5141 FALSE
GSE68846 GSE68846_KO_vs_Control_05.csv.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE67756 GSE67756_LB2A-vs-LA2A.compare.txt.gz anti-conservative 0.44 NA NA NA Larimichthys crocea 215358 FALSE
GSE32038 GSE32038_cds.diff.gz anti-conservative 0.07 NA NA NA Drosophila melanogaster 7227 FALSE
GSE66158 GSE66158_nc_vs_59_differentially_expressed_genes_FPKM_GEO.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE68846 GSE68846_KO_vs_Control_10.csv.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE67756 GSE67756_LB2A-vs-LA2A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA Larimichthys crocea 215358 FALSE
GSE81043 GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz anti-conservative 0.48 anti-conservative 0.14 Homo sapiens 9606 FALSE
GSE68846 GSE68846_KO_vs_Control_15.csv.gz anti-conservative 0.01 NA NA NA Mus musculus 10090 FALSE
GSE67756 GSE67756_LB2A-vs-LC2A.compare.txt.gz anti-conservative 0.53 NA NA NA Larimichthys crocea 215358 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE97060 GSE97060_122KOMouse_SleuthOutput.txt.gz anti-conservative 0.46 NA NA NA Mus musculus 10090 FALSE
GSE68846 GSE68846_KO_vs_Control_20.csv.gz anti-conservative 0.01 anti-conservative 0.01 Mus musculus 10090 FALSE
GSE67756 GSE67756_LB2A-vs-LC2A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA Larimichthys crocea 215358 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE37001 GSE37001_DEgenes.txt.gz anti-conservative 0.00 anti-conservative 0.00 Homo sapiens 9606 FALSE
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz anti-conservative 0.61 NA NA NA Homo sapiens 9606 FALSE
GSE67756 GSE67756_LB2A-vs-LF1A.compare.txt.gz anti-conservative 0.49 NA NA NA Larimichthys crocea 215358 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE38764 GSE38764_DESeq.nbVsneuron-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 Drosophila melanogaster 7227 FALSE
GSE38764 GSE38764_DESeq.nbVsneuron-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 Drosophila melanogaster 7227 FALSE
GSE37001 GSE37001_DEintrons.txt.gz anti-conservative 0.00 anti-conservative 0.00 Homo sapiens 9606 FALSE
GSE95108 GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest anti-conservative 0.76 NA NA NA Mus musculus 10090 FALSE
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_sig_anno.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE67756 GSE67756_LB2A-vs-LF1A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA Larimichthys crocea 215358 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE37001 GSE37001_DEisoforms.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.00 NA NA NA Tetrahymena thermophila 5911 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE32038 GSE32038_promoters.diff.gz anti-conservative 0.05 NA NA NA Drosophila melanogaster 7227 FALSE
GSE77568 GSE77568_CHIP_DMSO_vs_JQ1.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE77568 GSE77568_CHIP_DMSO_vs_JQ1.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE83375 GSE83375_GB_glia.FPKM.txt.gz anti-conservative 0.66 NA NA NA Drosophila melanogaster 7227 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.00 NA NA NA Tetrahymena thermophila 5911 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-UP anti-conservative 0.00 NA NA NA Tetrahymena thermophila 5911 FALSE
GSE64413 GSE64413_orf57_pval_cutoff_0.001.csv.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE32038 GSE32038_splicing.diff.gz anti-conservative 0.06 NA NA NA Drosophila melanogaster 7227 FALSE
GSE74929 GSE74929_Diff_Exp.txt.gz-set-0 anti-conservative 0.00 NA NA NA Danio rerio 7955 FALSE
GSE74929 GSE74929_Diff_Exp.txt.gz-set-1 anti-conservative 0.22 NA NA NA Danio rerio 7955 FALSE
GSE77568 GSE77568_CHIP_DMSO_vs_input.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE77568 GSE77568_CHIP_DMSO_vs_input.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE79286 GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.00 NA NA NA Tetrahymena thermophila 5911 FALSE
GSE64413 GSE64413_orf57_pval_cutoff_0.05.csv.gz anti-conservative 0.04 NA NA NA Homo sapiens 9606 FALSE
GSE41590 GSE41590_Gene_expression.txt.gz anti-conservative 0.01 anti-conservative 0.01 Saccharomyces cerevisiae 4932 FALSE
GSE41590 GSE41590_Gene_expression.txt.gz anti-conservative 0.01 anti-conservative 0.01 Saccharomyces cerevisiae 4932 FALSE
GSE57217 GSE57217_bck1wt_geneexp_diff.txt.gz anti-conservative 0.73 NA NA NA Cryptococcus neoformans 5207 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE79820 GSE79820_all_de_cuffdiff.tsv.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE57254 GSE57254_WT_KD_CELF1_Fold_change.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE57217 GSE57217_mkk2wt_geneexp_diff.txt.gz anti-conservative 0.80 NA NA NA Cryptococcus neoformans 5207 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis elegans 6239 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis briggsae 6238 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis japonica 281687 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis brenneri 135651 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA Caenorhabditis remanei 31234 FALSE
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 anti-conservative 0.02 NA NA NA Homo sapiens 9606 FALSE
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative 0.56 NA NA NA Homo sapiens 9606 FALSE
GSE43189 GSE43189_processed_h99_rim101.csv.gz anti-conservative 0.46 NA NA NA Cryptococcus neoformans 5207 FALSE
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI anti-conservative 0.48 NA NA NA Mus musculus 10090 FALSE
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI anti-conservative 0.43 NA NA NA Mus musculus 10090 FALSE
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI anti-conservative 0.68 NA NA NA Mus musculus 10090 FALSE
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 anti-conservative 0.01 NA NA NA Homo sapiens 9606 FALSE
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative 0.03 NA NA NA Homo sapiens 9606 FALSE
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative 0.54 NA NA NA Homo sapiens 9606 FALSE
GSE57217 GSE57217_mpk1wt_geneexp_diff.txt.gz anti-conservative 0.77 NA NA NA Cryptococcus neoformans 5207 FALSE
GSE44457 GSE44457_Human_transcriptome_deg.txt.gz anti-conservative 0.00 NA NA NA Homo sapiens 9606 FALSE
GSE94512 GSE94512_NaPi_vs_Lys.txt.gz anti-conservative 0.95 anti-conservative 0.98 Staphylococcus aureus 1280 FALSE
GSE90013 GSE90013_cds_exp.diff_A_B_cds.txt.gz anti-conservative 0.03 NA NA NA Homo sapiens 9606 FALSE
GSE75510 GSE75510_diffExonExprZH1vsB6.txt.gz anti-conservative 0.94 NA NA NA Mus musculus 10090 FALSE
GSE67674 GSE67674_RNA-seq_analysis_PBSDMSOvsPBSGSK-J4.txt.gz anti-conservative 0.95 NA NA NA Mus musculus 10090 FALSE
GSE62448 GSE62448_merged_normalized_counts.tab.gz-set-0 anti-conservative 0.00 anti-conservative 0.00 Homo sapiens 9606 FALSE
GSE62448 GSE62448_merged_normalized_counts.tab.gz-set-1 anti-conservative 0.00 anti-conservative 0.00 Homo sapiens 9606 FALSE
GSE90013 GSE90013_gene_exp.diff_A_B_Gene.txt.gz anti-conservative 0.02 NA NA NA Homo sapiens 9606 FALSE
GSE75510 GSE75510_diffExonExprZH3vsB6.txt.gz anti-conservative 0.91 NA NA NA Mus musculus 10090 FALSE
GSE69110 GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz anti-conservative 0.58 anti-conservative 0.28 Homo sapiens 9606 FALSE
GSE90712 GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz anti-conservative 0.60 anti-conservative 0.36 Mus musculus 10090 FALSE
GSE90013 GSE90013_isoform_exp.diff_A_B_Isoform.txt.gz anti-conservative 0.03 NA NA NA Homo sapiens 9606 FALSE
GSE70876 GSE70876_Additional_file_4.xls.gz anti-conservative 0.32 NA NA NA Dunaliella tertiolecta 3047 FALSE
GSE95337 GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz anti-conservative 0.56 anti-conservative 0.38 Mus musculus 10090 FALSE
GSE79143 GSE79143_SNPCountsTable.txt.gz anti-conservative 0.49 NA NA NA Ovis aries 9940 FALSE
GSE90013 GSE90013_tss_group_exp.diff_A_B_tss.txt.gz anti-conservative 0.03 NA NA NA Homo sapiens 9606 FALSE
GSE52153 GSE52153_czt-1DMSOvsczt-1STS.txt.gz anti-conservative 0.55 NA NA NA Neurospora crassa 5141 FALSE
GSE40948 GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz anti-conservative 0.48 NA NA NA Mus musculus 10090 FALSE
GSE40948 GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz anti-conservative 0.48 NA NA NA Mus musculus 10090 FALSE
GSE82134 GSE82134_NCBI_res_root_deseq_full.xlsx anti-conservative 0.61 NA NA NA Hordeum vulgare 4513 FALSE
GSE78967 GSE78967_Deseq_Analysis.xlsx anti-conservative 0.47 anti-conservative 0.38 Schistosoma mansoni 6183 FALSE
GSE52153 GSE52153_wtDMSOvswtSTS.txt.gz anti-conservative 0.71 NA NA NA Neurospora crassa 5141 FALSE
GSE53265 GSE53265_DESeq.PBNbVsLBNb-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 Drosophila melanogaster 7227 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-0 anti-conservative 0.04 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-1 anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-2 anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-3 anti-conservative 0.03 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-4 anti-conservative 0.04 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-5 anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-6 anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-7 anti-conservative 0.03 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-8 anti-conservative 0.04 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-9 anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-10 anti-conservative 0.02 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-11 anti-conservative 0.03 NA NA NA Mus musculus 10090 FALSE
GSE66822 GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz anti-conservative 0.83 anti-conservative 0.74 Mus musculus 10090 FALSE
GSE53265 GSE53265_DESeq.PBNbVsPBNbMed27IR-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 Drosophila melanogaster 7227 FALSE
GSE56439 GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-ABA vs CK(>1.5 fold) anti-conservative 0.00 NA NA NA Arachis hypogaea 3818 FALSE
GSE56439 GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-water defici VS ABA (>1.5 fold) anti-conservative 0.00 NA NA NA Arachis hypogaea 3818 FALSE
GSE39812 GSE39812_FB_result_transcript_summary.tsv.txt.gz anti-conservative 0.65 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-0 anti-conservative 0.07 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-1 anti-conservative 0.03 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 anti-conservative 0.25 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 anti-conservative 0.23 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-0 anti-conservative 0.08 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-1 anti-conservative 0.15 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-2 anti-conservative 0.03 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 anti-conservative 0.22 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-0 anti-conservative 0.07 NA NA NA Mus musculus 10090 FALSE
GSE87448 GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-1 anti-conservative 0.03 NA NA NA Mus musculus 10090 FALSE
GSE75878 GSE75878_promoters.diff.gz anti-conservative 0.44 NA NA NA Mus musculus 10090 FALSE
GSE75833 GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz anti-conservative 0.60 anti-conservative 0.14 Drosophila melanogaster 7227 FALSE
GSE60968 GSE60968_VEC_vs_CRE_DE.txt.gz anti-conservative 0.38 NA NA NA Mus musculus 10090 FALSE
GSE50535 GSE50535_diffexp_1.txt.gz-set-0 anti-conservative 0.63 NA NA NA Homo sapiens 9606 FALSE
GSE50535 GSE50535_diffexp_1.txt.gz-set-1 anti-conservative 0.64 NA NA NA Homo sapiens 9606 FALSE
GSE93827 GSE93827_LMP1_2a_vs_GFP.txt.gz anti-conservative 0.51 anti-conservative 0.27 Mus musculus 10090 FALSE
GSE75878 GSE75878_splicing.diff.gz anti-conservative 0.38 NA NA NA Mus musculus 10090 FALSE
GSE70488 GSE70488_Day_vs_Night_sSeq.txt.gz anti-conservative 0.35 NA NA NA Acropora millepora 45264 FALSE
GSE59715 GSE59715_finalHiCRNAseqTable.csv.gz anti-conservative 0.73 anti-conservative 0.44 Caenorhabditis elegans 6239 FALSE
GSE50535 GSE50535_diffexp_2.txt.gz anti-conservative 0.56 NA NA NA Homo sapiens 9606 FALSE
GSE83134 GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0 anti-conservative 0.92 anti-conservative 0.99 Mus musculus 10090 FALSE
GSE50535 GSE50535_diffexp_3.txt.gz-set-0 anti-conservative 0.61 NA NA NA Homo sapiens 9606 FALSE
GSE50535 GSE50535_diffexp_3.txt.gz-set-1 anti-conservative 0.30 NA NA NA Homo sapiens 9606 FALSE
GSE80348 GSE80348_20160316_6h_wt_vs_mu.xlsx anti-conservative 0.52 NA NA NA Danio rerio 7955 FALSE
GSE87398 GSE87398_gene_exp.diff.gz anti-conservative 0.83 NA NA NA Acinetobacter baumannii ATCC 17978 400667 FALSE
GSE99096 GSE99096_Yang_Processed_data_Oxidative_Stress.xlsx anti-conservative 0.31 NA NA NA Lactobacillus plantarum 1590 FALSE
GSE70069 GSE70069_Deregulated_genes_upon_knock-down_of_Setdb1_in_C2C12.txt.gz anti-conservative 0.00 anti-conservative 0.00 Mus musculus 10090 FALSE
GSE52080 GSE52080_processed_data_pvalue-filtered.txt.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted anti-conservative 0.62 anti-conservative 0.16 Mus musculus 10090 FALSE
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted anti-conservative 0.53 anti-conservative 0.18 Mus musculus 10090 FALSE
GSE74171 GSE74171_expressed_transcript_aging_RNAseq_posterior_midgut.txt.gz anti-conservative 0.51 NA NA NA Drosophila melanogaster 7227 FALSE
GSE93877 GSE93877_NB4_RNASeq_ATRA.txt.gz anti-conservative 0.84 anti-conservative 0.75 Homo sapiens 9606 FALSE
GSE74171 GSE74171_processed_aging_data.txt.gz anti-conservative 0.01 anti-conservative 0.00 Drosophila melanogaster 7227 FALSE
GSE57482 GSE57482_output_score.txt.gz anti-conservative 0.25 NA NA NA Mus musculus 10090 FALSE
GSE89238 GSE89238_SET2_KO_DESeq2_output.txt.gz anti-conservative 0.63 anti-conservative 0.67 Saccharomyces cerevisiae 4932 FALSE
GSE93877 GSE93877_NB4_RNASeq_DMSO.txt.gz anti-conservative 0.95 anti-conservative 0.93 Homo sapiens 9606 FALSE
GSE87398 GSE87398_genes_group_exp.diff.gz anti-conservative 0.83 NA NA NA Acinetobacter baumannii ATCC 17978 400667 FALSE
GSE73323 GSE73323_gene_expression_profiles.txt.gz anti-conservative 0.00 NA NA NA Pseudomonas aeruginosa 287 FALSE
GSE65688 GSE65688_gene_exp.diff_GFP_TAT_Gene.csv.gz anti-conservative 0.02 NA NA NA Homo sapiens 9606 FALSE
GSE59571 GSE59571_S13113_genesdiff.xlsx anti-conservative 0.70 NA NA NA Mus musculus 10090 FALSE
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative 0.25 anti-conservative 0.23 Homo sapiens 9606 FALSE
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative 0.25 anti-conservative 0.23 Homo sapiens 9606 FALSE
GSE94280 GSE94280_DESeq2_results_Y_vs_O.txt.gz anti-conservative 0.61 anti-conservative 0.33 Homo sapiens 9606 FALSE
GSE93313 GSE93313_DESeq_2Dvs3D.txt.gz anti-conservative 0.77 anti-conservative 0.42 Mus musculus 10090 FALSE
GSE74168 GSE74168_expressed_transcripts_RNAseq_GLIrnai_posterior_midgut_EC.txt.gz anti-conservative 0.44 NA NA NA Drosophila melanogaster 7227 FALSE
GSE68998 GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz anti-conservative 0.59 anti-conservative 0.47 Mus musculus 10090 FALSE
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative 0.41 anti-conservative 0.09 Homo sapiens 9606 FALSE
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative 0.41 anti-conservative 0.09 Homo sapiens 9606 FALSE
GSE93313 GSE93313_DESeq_2DvsTranswell.txt.gz anti-conservative 0.67 anti-conservative 0.34 Mus musculus 10090 FALSE
GSE86235 GSE86235_KORvsKOS.xls.gz anti-conservative 0.00 NA NA NA Mus musculus 10090 FALSE
GSE36959 GSE36959_gene_exp_diff.txt.gz anti-conservative 0.64 NA NA NA Nannochloropsis oceanica 145522 FALSE
GSE93313 GSE93313_DESeq_3DvsTranswell.txt.gz anti-conservative 0.79 anti-conservative 0.55 Mus musculus 10090 FALSE
GSE86054 GSE86054_gene_expression.txt.gz anti-conservative 0.95 anti-conservative 0.89 Drosophila melanogaster 7227 FALSE
GSE84481 GSE84481_3xTg.txt.gz anti-conservative 0.05 NA NA NA Mus musculus 10090 FALSE
GSE72491 GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz anti-conservative 0.72 anti-conservative 0.68 Mus musculus 10090 FALSE
GSE49587 GSE49587_ORvSmn_DEUtable.txt.gz anti-conservative 0.77 NA NA NA Drosophila melanogaster 7227 FALSE
GSE93547 GSE93547_LMvsWTM_cleaned_deseq2.csv.gz anti-conservative 0.51 anti-conservative 0.32 Vibrio parahaemolyticus RIMD 2210633 223926 FALSE
GSE85847 GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz anti-conservative 0.66 anti-conservative 0.57 Arabidopsis thaliana 3702 FALSE
GSE60191 GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1 anti-conservative 0.32 NA NA NA Homo sapiens 9606 FALSE
GSE84481 GSE84481_Neuro2a.txt.gz-set-0 anti-conservative 0.04 NA NA NA Mus musculus 10090 FALSE
GSE84481 GSE84481_Neuro2a.txt.gz-set-1 anti-conservative 0.04 NA NA NA Mus musculus 10090 FALSE
GSE51645 GSE51645_ASE_processed_data.txt.gz anti-conservative 0.98 NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE51645 GSE51645_ASE_processed_data.txt.gz anti-conservative 0.98 NA NA NA Saccharomyces cerevisiae 4932 FALSE
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative 0.47 NA NA NA Chlamydomonas reinhardtii 3055 FALSE
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative 0.47 NA NA NA Chlamydomonas reinhardtii 3055 FALSE
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 anti-conservative 0.57 anti-conservative 0.35 Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 anti-conservative 0.57 anti-conservative 0.35 Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.46 anti-conservative 0.17 Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.46 anti-conservative 0.17 Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.67 NA NA NA Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.67 NA NA NA Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.57 anti-conservative 0.31 Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.57 anti-conservative 0.31 Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.68 NA NA NA Mus musculus 10090 FALSE
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.68 NA NA NA Mus musculus 10090 FALSE
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA Drosophila ananassae 7217 FALSE
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA Drosophila pseudoobscura 7237 FALSE
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA Drosophila yakuba 7245 FALSE
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA Drosophila pseudoobscura 7237 FALSE
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA Drosophila ananassae 7217 FALSE
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA Drosophila pseudoobscura 7237 FALSE
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA Drosophila yakuba 7245 FALSE
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA Drosophila pseudoobscura 7237 FALSE
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative 0.56 NA NA NA Pseudomonas aeruginosa MPAO1/P1 1131757 FALSE
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative 0.56 NA NA NA Staphylococcus aureus subsp. aureus str. Newman 426430 FALSE
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative 0.68 NA NA NA Pseudomonas aeruginosa MPAO1/P1 1131757 FALSE
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative 0.68 NA NA NA Staphylococcus aureus subsp. aureus str. Newman 426430 FALSE
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative 0.67 NA NA NA Thalassiosira pseudonana 35128 FALSE
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative 0.67 NA NA NA Fragilariopsis cylindrus 186039 FALSE
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative 0.67 NA NA NA Pseudo-nitzschia multiseries 37319 FALSE
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative 0.57 NA NA NA Thalassiosira pseudonana 35128 FALSE
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative 0.57 NA NA NA Fragilariopsis cylindrus 186039 FALSE
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative 0.57 NA NA NA Pseudo-nitzschia multiseries 37319 FALSE
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative 0.61 NA NA NA Nitrosomonas europaea 915 FALSE
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative 0.61 NA NA NA Nitrobacter winogradskyi 913 FALSE
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative 0.61 NA NA NA Nitrobacter winogradskyi 913 TRUE
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz anti-conservative 0.46 anti-conservative 0.03 Coprinopsis cinerea 5346 FALSE
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz anti-conservative 0.46 anti-conservative 0.03 Coprinopsis cinerea 5346 FALSE
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative 0.56 NA NA NA Camponotus castaneus 105051 TRUE
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative 0.56 NA NA NA Camponotus castaneus 105051 FALSE
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative 0.56 NA NA NA Ophiocordyceps unilateralis 268505 FALSE
Table 5: SRP and related stats for anti-conservative P value histograms. pi0 was calculated using qvalue::pi0est() function.
Accession suppdata_id Histogram Type SRP pi0 fp rs ud Histogram after filter Type after filter SRP after filter pi0 after filter fp after filter rs after filter ud after filter
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative 0.95 0.46 397 7202 357 NA NA NA NA NA NA NA
GSE32038 GSE32038_cds.diff.gz anti-conservative 1.00 0.06 560 10614 20 NA NA NA NA NA NA NA
GSE32038 GSE32038_promoters.diff.gz anti-conservative 0.99 0.04 718 13444 194 NA NA NA NA NA NA NA
GSE32038 GSE32038_splicing.diff.gz anti-conservative 1.00 0.07 857 16274 1 NA NA NA NA NA NA NA
GSE37682 GSE37682_RAW.txt.gz anti-conservative 0.51 0.71 48 469 863 NA NA NA NA NA NA NA
GSE40478 GSE40478_output_score.txt.gz anti-conservative 0.52 0.55 445 4367 7900 NA NA NA NA NA NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.84 0.18 756 12000 2832 NA NA NA NA NA NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.80 0.21 2569 39253 11892 NA NA NA NA NA NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.87 0.24 681 11290 1882 NA NA NA NA NA NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.85 0.24 764 12401 2488 NA NA NA NA NA NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.91 0.18 747 12929 1385 NA NA NA NA NA NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.95 0.12 1069 19328 1036 NA NA NA NA NA NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.91 0.18 772 13347 1442 NA NA NA NA NA NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.93 0.16 2990 52587 4551 NA NA NA NA NA NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.94 0.15 996 17833 1168 NA NA NA NA NA NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.96 0.14 2192 39834 1894 NA NA NA NA NA NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-0 anti-conservative 0.71 0.74 142 1930 1083 NA NA NA NA NA NA NA
GSE43189 GSE43189_processed_h99_rim101.csv.gz anti-conservative 0.81 0.43 223 3412 1013 NA NA NA NA NA NA NA
GSE44402 GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz anti-conservative 0.97 0.18 58 1074 38 NA NA NA NA NA NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-1 anti-conservative 1.00 0.15 687 13046 12 NA NA NA NA NA NA NA
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-2 anti-conservative 0.86 0.00 449 7304 1430 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-2 anti-conservative 0.85 0.00 440 7129 1432 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-2 anti-conservative 0.85 0.00 388 6250 1322 NA NA NA NA NA NA NA
GSE49587 GSE49587_ORvSmn_DEUtable.txt.gz anti-conservative 0.80 0.97 79 1193 386 NA NA NA NA NA NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.47 0.43 516 4614 11018 anti-conservative 0.98 0.12 120 2235 42
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.07 0.80 288 407 67970 NA NA NA NA NA NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.31 0.61 235 1407 9730 anti-conservative 0.87 0.22 94 1557 256
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.07 0.81 273 379 65576 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-0 anti-conservative 0.65 0.45 451 5579 4575 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-1 anti-conservative 0.64 0.49 414 5067 4344 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_2.txt.gz anti-conservative 0.65 0.46 549 6731 5735 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-0 anti-conservative 0.66 0.52 525 6618 5044 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-1 anti-conservative 0.96 0.28 1130 20628 872 NA NA NA NA NA NA NA
GSE50708 GSE50708_DE_result.txt.gz anti-conservative 0.96 0.32 449 8157 401 NA NA NA NA NA NA NA
GSE51037 GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz anti-conservative 0.74 0.96 6 87 41 NA NA NA NA NA NA NA
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative 0.36 0.68 36 248 1199 NA NA NA NA NA NA NA
GSE54440 GSE54440_WT_Z2_RNAseq_rep2.txt.gz anti-conservative 0.61 0.40 192 2231 2309 NA NA NA NA NA NA NA
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative 0.94 0.64 100 1785 118 NA NA NA NA NA NA NA
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative 0.88 0.81 24 403 60 NA NA NA NA NA NA NA
GSE57217 GSE57217_bck1wt_geneexp_diff.txt.gz anti-conservative 0.48 0.80 37 336 751 NA NA NA NA NA NA NA
GSE57217 GSE57217_mkk2wt_geneexp_diff.txt.gz anti-conservative 0.72 0.90 28 389 205 NA NA NA NA NA NA NA
GSE57217 GSE57217_mpk1wt_geneexp_diff.txt.gz anti-conservative 0.31 0.79 26 151 1085 NA NA NA NA NA NA NA
GSE57397 GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz anti-conservative 0.65 0.71 536 6576 5596 NA NA NA NA NA NA NA
GSE57397 GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz anti-conservative 0.31 0.37 572 3394 23911 NA NA NA NA NA NA NA
GSE57397 GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz anti-conservative 0.32 0.28 663 4006 26974 NA NA NA NA NA NA NA
GSE57397 GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz anti-conservative 0.32 0.37 589 3618 23462 NA NA NA NA NA NA NA
GSE57482 GSE57482_output_score.txt.gz anti-conservative 0.49 0.41 548 5103 10808 NA NA NA NA NA NA NA
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative 0.55 0.63 28 287 430 NA NA NA NA NA NA NA
GSE58053 GSE58053_25mm-over-0mm.txt.gz anti-conservative 0.38 0.54 29 208 907 NA NA NA NA NA NA NA
GSE58053 GSE58053_25mm-over-1mm.txt.gz anti-conservative 0.19 0.62 13 46 990 NA NA NA NA NA NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-0 anti-conservative 0.32 0.56 172 1045 6930 NA NA NA NA NA NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-1 anti-conservative 0.73 0.71 257 3574 1802 NA NA NA NA NA NA NA
GSE59571 GSE59571_S13113_genesdiff.xlsx anti-conservative 0.67 0.68 298 3794 2775 NA NA NA NA NA NA NA
GSE59715 GSE59715_finalHiCRNAseqTable.csv.gz anti-conservative 0.51 0.79 111 1072 2066 anti-conservative 0.61 0.23 59 682 707
GSE59814 GSE59814_processed_data.txt.gz anti-conservative 0.33 0.62 71 437 2780 NA NA NA NA NA NA NA
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-1 anti-conservative 0.47 0.43 813 7295 17235 NA NA NA NA NA NA NA
GSE60191 GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1 anti-conservative 0.20 0.18 370 1408 27995 NA NA NA NA NA NA NA
GSE60968 GSE60968_VEC_vs_CRE_DE.txt.gz anti-conservative 0.89 0.36 399 6776 912 NA NA NA NA NA NA NA
GSE62785 GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok anti-conservative 0.52 0.69 28 273 481 NA NA NA NA NA NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-5 anti-conservative 0.97 0.97 192 3527 129 NA NA NA NA NA NA NA
GSE63510 GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz anti-conservative 0.47 0.58 408 3665 8616 anti-conservative 0.90 0.19 76 1296 163
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz anti-conservative 0.09 0.92 12 20 2292 NA NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz anti-conservative 0.10 0.63 60 117 9989 NA NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz anti-conservative 0.02 0.79 5 1 6196 NA NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz anti-conservative 0.01 0.79 4 1 6147 NA NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz anti-conservative 0.28 0.92 35 184 1723 NA NA NA NA NA NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt) anti-conservative 0.25 0.89 6 31 360 NA NA NA NA NA NA NA
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz anti-conservative 0.55 0.51 174 1820 2676 NA NA NA NA NA NA NA
GSE65973 GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz anti-conservative 0.71 0.31 273 3686 2110 anti-conservative 0.83 0.34 71 1130 272
GSE66793 GSE66793_cmp1-3-geo-gene.tsv.gz anti-conservative 0.03 0.81 5 3 2544 NA NA NA NA NA NA NA
GSE66822 GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz anti-conservative 0.21 0.83 38 150 2671 anti-conservative 0.26 0.74 8 38 423
GSE67334 GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz anti-conservative 0.46 0.70 109 956 2443 anti-conservative 0.57 0.46 42 452 599
GSE67756 GSE67756_LA2A-vs-LC2A.compare.txt.gz anti-conservative 0.79 0.34 1509 22680 7587 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LA2A.compare.txt.gz anti-conservative 0.80 0.41 1391 21088 6686 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LC2A.compare.txt.gz anti-conservative 0.73 0.54 973 13485 6859 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LF1A.compare.txt.gz anti-conservative 0.68 0.37 1268 16356 11406 NA NA NA NA NA NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz anti-conservative 0.90 0.23 956 16395 1952 anti-conservative 0.99 0.10 98 1862 10
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz anti-conservative 0.94 0.24 936 16770 1079 NA NA NA NA NA NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz anti-conservative 0.90 0.23 956 16395 1952 anti-conservative 0.99 0.10 98 1862 10
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz anti-conservative 0.94 0.24 936 16770 1079 NA NA NA NA NA NA NA
GSE68998 GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz anti-conservative 0.28 0.66 152 815 7328 anti-conservative 0.72 0.37 33 452 252
GSE69001 GSE69001_DE_list_planktonic_v_biolfim.txt.gz anti-conservative 0.88 0.44 95 1600 236 NA NA NA NA NA NA NA
GSE69001 GSE69001_DE_list_plate_v_biofilm.txt.gz anti-conservative 0.98 0.42 108 2024 36 NA NA NA NA NA NA NA
GSE69110 GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz anti-conservative 0.45 0.60 225 1931 5169 anti-conservative 0.89 0.26 67 1130 150
GSE71185 GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.65 0.32 221 2744 2239 NA NA NA NA NA NA NA
GSE71185 GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.51 0.43 142 1365 2620 NA NA NA NA NA NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz anti-conservative 0.04 0.83 3 2 1578 NA NA NA NA NA NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.38 0.74 40 290 1225 NA NA NA NA NA NA NA
GSE71539 GSE71539_TP0vsTP23_gene_results.txt.gz anti-conservative 0.04 0.80 5 4 2092 NA NA NA NA NA NA NA
GSE71539 GSE71539_TP0vsTP23_tag_results.txt.gz anti-conservative 0.07 0.80 25 35 5811 NA NA NA NA NA NA NA
GSE71710 GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz anti-conservative 0.15 0.76 24 67 2590 anti-conservative 0.14 0.74 5 12 555
GSE71862 GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz anti-conservative 0.75 0.38 419 5957 2669 anti-conservative 0.73 0.33 59 812 416
GSE71902 GSE71902_WILD-vs-CPH2.txt.gz anti-conservative 0.01 0.78 0 0 1330 NA NA NA NA NA NA NA
GSE72491 GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz anti-conservative 0.36 0.64 104 701 3584 anti-conservative 0.44 0.63 17 144 413
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative 0.24 0.73 70 317 4276 NA NA NA NA NA NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative 0.10 0.71 32 60 5482 NA NA NA NA NA NA NA
GSE74103 GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.56 0.55 593 6329 8796 anti-conservative 0.77 0.50 30 436 164
GSE74103 GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.74 0.32 1190 16801 7832 anti-conservative 0.93 0.18 58 1025 88
GSE74103 GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.91 0.22 1679 29066 3110 NA NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz anti-conservative 0.97 0.02 86 1592 49 NA NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz anti-conservative 0.98 0.03 139 2575 65 NA NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz anti-conservative 0.99 0.04 285 5340 80 NA NA NA NA NA NA NA
GSE75510 GSE75510_diffExonExprZH1vsB6.txt.gz anti-conservative 0.04 0.97 1 1 390 NA NA NA NA NA NA NA
GSE75510 GSE75510_diffExonExprZH3vsB6.txt.gz anti-conservative 0.00 0.95 0 0 887 NA NA NA NA NA NA NA
GSE75731 GSE75731_ckvsd119a_gene_exp_diff.txt.gz anti-conservative 0.83 0.47 62 969 246 NA NA NA NA NA NA NA
GSE75731 GSE75731_ckvsdrug_gene_exp_diff.txt.gz anti-conservative 0.96 0.72 38 690 31 NA NA NA NA NA NA NA
GSE75731 GSE75731_ckvsv149a_gene_exp_diff.txt.gz anti-conservative 0.95 0.82 24 441 23 NA NA NA NA NA NA NA
GSE75962 GSE75962_control_vs_H2O2.DEseq.txt.gz anti-conservative 0.89 0.92 62 1042 143 anti-conservative 0.21 0.62 12 46 833
GSE77025 GSE77025_gene_exp.diff.gz anti-conservative 1.00 0.44 1266 23953 110 NA NA NA NA NA NA NA
GSE77044 GSE77044_comparison2.xls.gz anti-conservative 0.14 0.58 25 64 3008 anti-conservative 0.26 0.60 8 37 414
GSE79039 GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.66 0.59 166 2072 1663 anti-conservative 0.78 0.30 86 1264 470
GSE79039 GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.53 0.67 108 1085 1821 anti-conservative 0.69 0.45 60 787 527
GSE79143 GSE79143_SNPCountsTable.txt.gz anti-conservative 0.75 0.42 554 7861 3560 NA NA NA NA NA NA NA
GSE79830 GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz anti-conservative 0.58 0.84 32 357 443 NA NA NA NA NA NA NA
GSE80135 GSE80135_Lipo_siProx_SC_results.csv.gz anti-conservative 0.04 0.87 3 2 1746 anti-conservative 0.09 0.72 3 4 499
GSE80135 GSE80135_siNeg_siProx_sig_results.csv.gz anti-conservative 0.27 0.65 68 352 3515 anti-conservative 0.64 0.37 40 486 440
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative 0.42 0.49 36 286 951 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative 0.97 0.02 168 3087 106 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative 0.45 0.47 42 355 984 NA NA NA NA NA NA NA
GSE80348 GSE80348_20160316_6h_wt_vs_mu.xlsx anti-conservative 0.49 0.56 432 4037 8452 NA NA NA NA NA NA NA
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz anti-conservative 0.34 0.92 33 216 1195 anti-conservative 0.20 0.88 2 6 133
GSE81128 GSE81128_DESeq2_Results.txt.gz anti-conservative 0.86 0.18 588 9608 1829 anti-conservative 0.98 0.09 92 1721 32
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz anti-conservative 0.49 0.57 146 1344 2926 anti-conservative 0.51 0.48 33 323 611
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz anti-conservative 0.64 0.48 234 2854 2464 anti-conservative 0.67 0.35 55 704 512
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz anti-conservative 0.31 0.67 65 382 2734 anti-conservative 0.28 0.61 14 73 684
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv anti-conservative 0.55 0.57 343 3584 5322 anti-conservative 0.74 0.33 46 645 299
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up anti-conservative 0.01 0.67 133 18 345558 NA NA NA NA NA NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down anti-conservative 0.51 0.50 215 2071 3949 anti-conservative 0.68 0.37 39 499 348
GSE83134 GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0 anti-conservative 0.19 0.94 13 46 1064 anti-conservative 0.09 0.98 0 1 57
GSE83218 GSE83218_HSC.txt.gz anti-conservative 0.02 0.80 2 1 1923 anti-conservative 0.03 0.60 2 1 1091
GSE83541 GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz anti-conservative 0.33 0.76 67 426 2552 anti-conservative 0.28 0.68 3 18 168
GSE83736 GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz anti-conservative 0.44 0.49 451 3801 10728 anti-conservative 0.92 0.25 72 1261 124
GSE83736 GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz anti-conservative 0.72 0.71 423 5812 3065 anti-conservative 0.90 0.25 72 1231 150
GSE84737 GSE84737_All_genes_unfiltered_DE.txt.gz anti-conservative 0.72 0.36 339 4644 2478 NA NA NA NA NA NA NA
GSE84737 GSE84737_Genes_filtered_DE.txt.gz anti-conservative 0.70 0.38 234 3140 1864 NA NA NA NA NA NA NA
GSE85329 GSE85329_IGF_project_IGF_results.txt.gz anti-conservative 0.32 0.75 110 672 4409 anti-conservative 0.57 0.43 38 416 538
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO anti-conservative 0.69 0.77 346 4554 2921 NA NA NA NA NA NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ anti-conservative 0.68 0.85 207 2690 1815 NA NA NA NA NA NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted anti-conservative 0.62 0.50 480 5677 5533 anti-conservative 0.97 0.09 89 1645 47
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted anti-conservative 0.67 0.46 554 7025 5244 anti-conservative 0.96 0.11 103 1884 71
GSE86054 GSE86054_gene_expression.txt.gz anti-conservative 0.55 0.95 22 230 343 anti-conservative 0.71 0.91 6 80 46
GSE87167 GSE87167_all_genes.txt.gz anti-conservative 0.89 0.33 1168 19813 2665 NA NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 anti-conservative 0.98 0.21 181 3373 66 NA NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 anti-conservative 0.98 0.11 204 3772 98 NA NA NA NA NA NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 anti-conservative 0.99 0.09 200 3748 49 NA NA NA NA NA NA NA
GSE87495 GSE87495_results_dds_gencode22.csv.gz anti-conservative 0.91 0.30 566 9760 1096 anti-conservative 0.99 0.11 86 1615 20
GSE87706 GSE87706_SM_vs_RODI.txt.gz anti-conservative 0.84 0.20 105 1688 367 anti-conservative 0.99 0.08 43 818 7
GSE89238 GSE89238_SET2_KO_DESeq2_output.txt.gz anti-conservative 0.09 0.77 21 37 3848 anti-conservative 0.35 0.59 9 63 328
GSE89773 GSE89773_combined_expression_table.txt.gz-set-0 anti-conservative 0.82 0.36 188 2921 801 NA NA NA NA NA NA NA
GSE89773 GSE89773_combined_expression_table.txt.gz-set-1 anti-conservative 0.77 0.47 146 2122 840 anti-conservative 0.93 0.21 66 1172 88
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI anti-conservative 0.68 0.39 333 4287 3020 NA NA NA NA NA NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI anti-conservative 0.77 0.35 399 5824 2291 NA NA NA NA NA NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI anti-conservative 0.11 0.67 29 61 4500 NA NA NA NA NA NA NA
GSE90712 GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz anti-conservative 0.72 0.59 348 4750 2602 anti-conservative 0.84 0.27 78 1233 288
GSE90889 GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx anti-conservative 0.22 0.73 75 317 4950 anti-conservative 0.59 0.64 22 249 297
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi anti-conservative 0.64 0.45 294 3592 3098 anti-conservative 0.90 0.38 65 1115 141
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi anti-conservative 0.22 0.75 47 198 3117 anti-conservative 0.28 0.79 8 41 367
GSE92506 GSE92506_DEseq2_wholeTable.txt.gz anti-conservative 0.53 0.57 288 2909 4814 anti-conservative 0.76 0.31 55 795 333
GSE93547 GSE93547_LMvsWTM_cleaned_deseq2.csv.gz anti-conservative 0.74 0.44 112 1588 738 anti-conservative 0.92 0.27 44 773 78
GSE93684 GSE93684_S1-1A-vs-R1-1A.compare.txt.gz anti-conservative 0.91 0.24 3155 54738 5712 NA NA NA NA NA NA NA
GSE93827 GSE93827_LMP1_2a_vs_GFP.txt.gz anti-conservative 0.77 0.44 373 5438 2141 anti-conservative 0.95 0.23 72 1306 74
GSE93877 GSE93877_NB4_RNASeq_ATRA.txt.gz anti-conservative 0.21 0.78 30 119 2214 anti-conservative 0.32 0.71 12 74 510
GSE93877 GSE93877_NB4_RNASeq_DMSO.txt.gz anti-conservative 0.27 0.96 7 36 363 anti-conservative 0.19 0.93 2 7 153
GSE95108 GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest anti-conservative 0.05 0.95 7 7 2442 NA NA NA NA NA NA NA
GSE96626 GSE96626_DE_TrtVsVeh.xlsx anti-conservative 0.22 0.89 16 66 1043 anti-conservative 0.37 0.94 3 19 86
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative 0.95 0.26 257 4634 266 anti-conservative 0.95 0.17 64 1155 70
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative 0.67 0.40 146 1856 1361 NA NA NA NA NA NA NA
GSE97060 GSE97060_122KOMouse_SleuthOutput.txt.gz anti-conservative 0.29 0.50 231 1257 10937 NA NA NA NA NA NA NA
GSE97421 GSE97421_GFP_RFP.txt.gz anti-conservative 0.84 0.69 314 5009 1130 anti-conservative 0.89 0.26 59 1007 136
GSE97421 GSE97421_GFP_Whole.txt.gz anti-conservative 0.83 0.29 707 11194 2680 NA NA NA NA NA NA NA
GSE98526 GSE98526_A12_vs_UA159T5.txt.gz anti-conservative 0.63 0.53 31 369 340 NA NA NA NA NA NA NA
GSE98526 GSE98526_A1_vs_UA159T5.txt.gz anti-conservative 0.80 0.85 13 193 58 NA NA NA NA NA NA NA
GSE99944 GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz anti-conservative 0.65 0.47 352 4346 3617 anti-conservative 0.86 0.23 63 1036 197
GSE40218 GSE40218_processed_DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.15 0.79 3 8 292
GSE41766 GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz NA NA NA NA NA NA NA anti-conservative 0.98 0.27 56 1032 26
GSE44233 GSE44233_processed_data.txt.gz NA NA NA NA NA NA NA anti-conservative 0.06 0.63 2 3 662
GSE46046 GSE46046_GenesTable.txt.gz NA NA NA NA NA NA NA anti-conservative 0.74 0.95 3 40 19
GSE46066 GSE46066_ICRFVsDMSO.txt.gz NA NA NA NA NA NA NA anti-conservative 0.13 0.64 6 16 838
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 NA NA NA NA NA NA NA anti-conservative 0.88 0.29 88 1470 221
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 NA NA NA NA NA NA NA anti-conservative 0.41 0.51 27 212 753
GSE54846 GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz NA NA NA NA NA NA NA anti-conservative 0.75 0.40 53 750 336
GSE56346 GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz NA NA NA NA NA NA NA anti-conservative 0.96 0.19 89 1635 64
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz NA NA NA NA NA NA NA anti-conservative 0.96 0.01 58 1060 45
GSE58910 GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz NA NA NA NA NA NA NA anti-conservative 0.47 0.66 10 86 209
GSE61031 GSE61031_DE_polyaWT_vs_polyaKO.txt.gz NA NA NA NA NA NA NA anti-conservative 0.19 0.72 7 25 578
GSE61033 GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz NA NA NA NA NA NA NA anti-conservative 0.36 0.60 20 140 691
GSE61033 GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz NA NA NA NA NA NA NA anti-conservative 0.33 0.85 7 47 281
GSE61336 GSE61336_results_167_vs_WTL.txt.gz NA NA NA NA NA NA NA anti-conservative 0.75 0.34 28 397 178
GSE61336 GSE61336_results_167_vs_WTZ.txt.gz NA NA NA NA NA NA NA anti-conservative 0.84 0.36 30 471 106
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz NA NA NA NA NA NA NA anti-conservative 0.40 0.44 29 218 822
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0 NA NA NA NA NA NA NA anti-conservative 0.21 0.96 1 3 56
GSE63836 GSE63836_C15Dx_versus_Untr.DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.83 0.35 70 1101 270
GSE63836 GSE63836_Dx_versus_C15Dx.DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.33 0.82 8 51 312
GSE65328 GSE65328_A17_6V.tab.gz NA NA NA NA NA NA NA anti-conservative 0.06 0.89 1 1 219
GSE65487 GSE65487_deseq.rminus_rplus.ensembl.csv.gz NA NA NA NA NA NA NA anti-conservative 0.89 0.26 91 1539 224
GSE65487 GSE65487_deseq.rplus_gplus.ensembl.csv.gz NA NA NA NA NA NA NA anti-conservative 0.98 0.15 116 2149 55
GSE67646 GSE67646_DESeq_1.10.1.txt.gz NA NA NA NA NA NA NA anti-conservative 0.94 0.18 82 1464 103
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz NA NA NA NA NA NA NA anti-conservative 0.94 0.16 88 1579 99
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz NA NA NA NA NA NA NA anti-conservative 0.94 0.16 88 1579 99
GSE69311 GSE69311_deseq_diff_genes.csv.gz NA NA NA NA NA NA NA anti-conservative 0.11 0.67 2 5 352
GSE70141 GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz NA NA NA NA NA NA NA anti-conservative 0.79 0.25 37 554 189
GSE70141 GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz NA NA NA NA NA NA NA anti-conservative 0.98 0.08 94 1750 38
GSE72390 GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx NA NA NA NA NA NA NA anti-conservative 0.47 0.74 9 76 186
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz NA NA NA NA NA NA NA anti-conservative 0.49 0.61 22 206 442
GSE74920 GSE74920_SupplementalTable1.xlsx.gz NA NA NA NA NA NA NA anti-conservative 0.91 0.29 66 1138 118
GSE74920 GSE74920_SupplementalTable3.xlsx.gz NA NA NA NA NA NA NA anti-conservative 0.73 0.38 43 592 303
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S1 NA NA NA NA NA NA NA anti-conservative 0.91 0.29 66 1138 118
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S3 NA NA NA NA NA NA NA anti-conservative 0.73 0.38 43 592 303
GSE75833 GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz NA NA NA NA NA NA NA anti-conservative 0.98 0.08 46 855 18
GSE76257 GSE76257_O-VG_OGS2.csv.gz NA NA NA NA NA NA NA anti-conservative 0.96 0.11 35 643 29
GSE77351 GSE77351_Farshchian.txt.gz NA NA NA NA NA NA NA anti-conservative 0.31 0.83 6 35 255
GSE77901 GSE77901_SLNCR1_vs_vector.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.03 0.54 2 1 1509
GSE77901 GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.01 0.86 0 0 472
GSE77901 GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.61 0.53 50 581 613
GSE77902 GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.09 0.69 5 9 965
GSE78240 GSE78240_DESeq_Output.txt.gz NA NA NA NA NA NA NA anti-conservative 0.69 0.60 33 432 281
GSE78967 GSE78967_Deseq_Analysis.xlsx NA NA NA NA NA NA NA anti-conservative 0.83 0.36 61 958 231
GSE79633 GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz NA NA NA NA NA NA NA anti-conservative 0.31 0.70 11 67 472
GSE79723 GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz NA NA NA NA NA NA NA anti-conservative 0.57 0.90 5 53 72
GSE79822 GSE79822_Deseq_totalRNA.txt.gz NA NA NA NA NA NA NA anti-conservative 1.00 0.59 10 183 0
GSE80128 GSE80128_P035_DESeq_KO-WT_pathway.txt.gz NA NA NA NA NA NA NA anti-conservative 0.20 0.82 3 12 224
GSE80135 GSE80135_Lipo_siProx_sig_results.csv.gz NA NA NA NA NA NA NA anti-conservative 0.22 0.62 8 35 571
GSE80135 GSE80135_siNeg_Lipo_results.csv.gz NA NA NA NA NA NA NA anti-conservative 0.18 0.73 5 17 436
GSE80135 GSE80135_siNeg_siProx_SC_results.csv.gz NA NA NA NA NA NA NA anti-conservative 0.13 0.62 5 12 642
GSE81043 GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz NA NA NA NA NA NA NA anti-conservative 0.99 0.11 98 1847 19
GSE81059 GSE81059_cns-control_vs_head-control.csv.gz NA NA NA NA NA NA NA anti-conservative 0.99 0.09 85 1596 13
GSE81593 GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx NA NA NA NA NA NA NA anti-conservative 0.85 0.26 56 902 194
GSE81593 GSE81593_2.Mcf10A_Vec_and_Hras.xlsx NA NA NA NA NA NA NA anti-conservative 0.49 0.62 17 160 339
GSE81865 GSE81865_RNAseq_uninjured-14dpi.txt.gz NA NA NA NA NA NA NA anti-conservative 0.79 0.37 29 432 147
GSE85328 GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz NA NA NA NA NA NA NA anti-conservative 0.23 0.66 15 64 926
GSE85565 GSE85565_Result_Table.csv.gz NA NA NA NA NA NA NA anti-conservative 0.67 0.47 30 385 279
GSE85847 GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz NA NA NA NA NA NA NA anti-conservative 0.73 0.52 40 548 286
GSE86521 GSE86521_DESeq_out_KO_vs_WT.txt.gz NA NA NA NA NA NA NA anti-conservative 0.52 0.69 21 206 367
GSE87808 GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz NA NA NA NA NA NA NA anti-conservative 0.14 0.82 3 7 320
GSE89004 GSE89004_ppGpp0_vs_H78_differential_all.xls.gz NA NA NA NA NA NA NA anti-conservative 0.95 0.16 43 785 39
GSE93313 GSE93313_DESeq_2Dvs3D.txt.gz NA NA NA NA NA NA NA anti-conservative 0.78 0.34 73 1083 380
GSE93313 GSE93313_DESeq_2DvsTranswell.txt.gz NA NA NA NA NA NA NA anti-conservative 0.88 0.26 92 1536 241
GSE93313 GSE93313_DESeq_3DvsTranswell.txt.gz NA NA NA NA NA NA NA anti-conservative 0.59 0.41 50 556 666
GSE93748 GSE93748_shTAZ_in_DU145_proceeded_data.xlsx NA NA NA NA NA NA NA anti-conservative 0.06 0.85 1 1 340
GSE93870 GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES NA NA NA NA NA NA NA anti-conservative 0.19 0.79 5 18 432
GSE93870 GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq NA NA NA NA NA NA NA anti-conservative 0.15 0.68 6 18 675
GSE93870 GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq NA NA NA NA NA NA NA anti-conservative 0.69 0.40 48 634 404
GSE94280 GSE94280_DESeq2_results_Y_vs_O.txt.gz NA NA NA NA NA NA NA anti-conservative 0.93 0.28 67 1182 99
GSE94587 GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz NA NA NA NA NA NA NA anti-conservative 0.38 0.83 6 43 180
GSE94587 GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz NA NA NA NA NA NA NA anti-conservative 0.67 0.54 28 365 261
GSE94587 GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz NA NA NA NA NA NA NA anti-conservative 0.56 0.80 10 109 152
GSE95337 GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz NA NA NA NA NA NA NA anti-conservative 0.90 0.36 78 1326 168
GSE97395 GSE97395_Treat_vs_control_diff.txt.gz NA NA NA NA NA NA NA anti-conservative 0.50 0.45 33 313 610

Discussion

We need to dicuss some things here.

Reproducibility of ChIP-Seq results is poor and highly dependent on the software tools used (Steinhauser et al. 2016).

References

Dowle, Matt, and Arun Srinivasan. 2019. Data.table: Extension of ‘Data.frame‘. https://CRAN.R-project.org/package=data.table.

Steinhauser, S., N. Kurzawa, R. Eils, and C. Herrmann. 2016. “A comprehensive comparison of tools for differential ChIP-seq analysis.” Brief. Bioinformatics 17 (6): 953–66.

Temple Lang, Duncan, and the CRAN Team. 2019. XML: Tools for Parsing and Generating Xml Within R and S-Plus. https://CRAN.R-project.org/package=XML.

Wickham, Hadley, and Jennifer Bryan. 2018. Readxl: Read Excel Files. https://CRAN.R-project.org/package=readxl.

Wickham, Hadley, James Hester, and Jeroen Ooms. 2018. Xml2: Parse Xml. https://CRAN.R-project.org/package=xml2.